1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACCTTATTGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactagacgtgcccatccttcatgtccaggaaataaactagattaattgcttggtcttatgatatttcaccatgataccaaggaaaaatcagtgac...
species | Zea mays |
transcript | GRMZM2G069758_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTAT-AACAG GTTATATAGGCEST: gi|211278750|gb|FL388232.1|FL388232
genomic: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactag ... tggttctcagGTTATATAGGC
EST: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAG GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAEST: gi|60397480|gb|DN230296.1|DN230296
genomic: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactag ... tggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
EST: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAG GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
genomic: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactag ... tggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACATTTAGAGGTCAGGTTCTTAATGGCAAACAGCTCTGGGACCTTATTGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactagacgtgcccatccttcatgtccaggaaataaactagattaattgcttggtcttatgatatttcaccatgataccaaggaaaaatcagtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA