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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatgttcctagctagttcttttactccctgatttcgcaagttcttgtaaactcttaccaacatgtttcctctgctag

Basic information

species Zea mays
transcript GRMZM2G068755_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 4
GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatgttcctagctagttcttttactccctgatttcgcaagttcttgtaaactcttaccaacatgtttcctctgctag
||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| | || ||| |   | |||  |  |||| | |      || |||||     | |  ||||| |||| ||| ||||
GAATCAATGGAGAAGGCTGTAAAGAACAAAGTGGCCAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAGGCACTTAGgtaagctcatagttgtatttttgccatcctgttatattttttttttgta---cttcattaacatctttcttctactag

upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g60050.1 (Oryza sativa), 5'ss of exon 4
GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatgttcctagctagttcttttactccctgatttcgcaagttcttgtaaactcttaccaacatg-tttcctctgctag
||| | |||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||  |  |   | || | |     | |     ||  | |  ||  | |  |||||  ||||  || ||||
GAATCAATGGAGAAGGCTGTAAAGAACAAAATGGCTAAAGCAGTTGTGCCTGCTATCGATGTAATGTTTCAAGCACTTAGgtaagttcctacttcctaactgtatttctgccatcctgttatttgtctgtaccttcattaacataatttctcctactag

upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 4
GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatg----ttcctagct-----agttcttttactccctgatttcgcaagttcttgtaaactct-taccaacat-gtttcctctgctag---
|| || |||||||| ||  | || |||||||| |||||||| || |||||||| || ||||| |||||||||||  |||||| ||     || | | |     |  | |  ||||      |||      || || | ||   | ||| |  ||  |||  | ||||     
GATGCAATGGAGAAAGCGATAAAAAACAAAGTTGCTAAAGCGGTGGTACCTGCAATAGATGTTATGTTTCAAGCTTTAAGgtttggaatctctttgatgcaacatatataatacttgtctcttttttttttttttatgaatcttatacaattattattttttatgctgctag

upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G35140.1 (Glycine max), 5'ss of exon 4
GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatg----ttcctagct--agttcttttactccctgatttcgcaagttcttgtaaactcttaccaacat-gtttcctctgctag---
|| || |||||||| ||  | || |||||||| |||||||| || |||||||| || ||||| |||||||||||  |||||| ||     || | | |  |     | || | | ||  ||      || ||  || ||  ||| |  ||  |||  | ||||     
GATGCAATGGAGAAAGCAATAAAAAACAAAGTTGCTAAAGCGGTGGTACCTGCAATAGATGTTATGTTTCAAGCTTTAAGgtttggaatctctttgttgcaacatatataatacttgtctttttcttttttttgaatcttatacaattattattttttgtgctgctag

upper sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 4
GAAGCTATGGAGAAGGCTGTGAAGAACAAAGTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatgttcctagctagttctttt--actccctgatttcgcaagttcttgtaaactcttaccaacatgtttcctctgctag-------
|| || |||||||| ||  | || |||||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||||| ||| | | | |   | |  |  |  | ||| |||      | |||      | || |  || |  ||  | || | |       
GATGCCATGGAGAAAGCAATTAAAAACAAAGTTGCCAAAGCAGTTGTACCTGCCATTGATGTTATGTTCCAAGCCCTAAGgtttgtgcattgatttctttgctggaaactctgctttattttatgcttagctgatttt-cagacttcattgttgtgtttgtaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211517040|gb|FL438272.1|FL438272
EST:     TTCAAGCACTAAG                         CGAATTTGGAACTAAGGTAGTGCCACCCAAAAAGATTCTGAAGATGCTACC
genomic: TTCAAGCACTAAGgtatgttcct ... cctctgctagCGAATTTGGAACTAAGGTAGTGCCACCCAAAAAGATTCTGAAGATGCTACC
EST: gi|32934909|gb|CF039721.1|CF039721
EST:     ACCTGCTATTGATGTGATGTTTCAAGCACTAAG                         CGAATTTGGAACTAAGGTAGTGCCACCCAAAAAGATTCTGAAGATGCTACC
genomic: ACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatgttcct ... cctctgctagCGAATTTGGAACTAAGGTAGTGCCACCCAAAAAGATTCTGAAGATGCTACC
EST: gi|71441120|gb|DR822170.1|DR822170
EST:     GTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAG                         CGAATTTGGAACTAAGGTAGTGCCACCCAAAAAGATTCTGAAGATGCTACC
genomic: GTGGCTAAAGCAGTTGTACCTGCTATTGATGTGATGTTTCAAGCACTAAGgtatgttcct ... cctctgctagCGAATTTGGAACTAAGGTAGTGCCACCCAAAAAGATTCTGAAGATGCTACC