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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATACAAGTACCATCGTCATCAGACCTTGAGAGTATCCTGTCACCAGATCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggcttagcttccaagttttctgtggcaacttgacttcaggtgtctataaatttacattcctgtattggatgtcttggctgctgacatttgtac...

Basic information

species Zea mays
transcript GRMZM2G068690_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430393|gb|DR811443.1|DR811443
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|22472364|gb|BU036844.1|BU036844
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|87156444|gb|DY401233.1|DY401233
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|93281796|gb|EB674060.1|EB674060
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|22541939|gb|BU092377.1|BU092377
EST:     TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|160481371|gb|EY254285.1|EY254285
EST:     TTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
EST: gi|26558592|gb|CA830827.1|CA830827
EST:     TCCAGTCTGCAGAGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAG                         CAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG
genomic: TCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggc ... tcaattgcagCAATGGATGAAAGCACTGAGCTCCTTCACTTGATTCTTGGTGGCAATGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAATACAAGTACCATCGTCATCAGACCTTGAGAGTATCCTGTCACCAGATCCAGTCTGCAGTGATCTTCAGTTGAAAGAGATAAACTACAATGCTGCAGgtaacacggcttagcttccaagttttctgtggcaacttgacttcaggtgtctataaatttacattcctgtattggatgtcttggctgctgacatttgtac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG