1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAGgtaaatctccacgcactctgagttcaaacagtgttgtcagatccctgtctgatcttttacctttttattattctcaccag
species | Zea mays |
transcript | GRMZM2G068392_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAG GAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCTGGAATAEST: gi|113817914|gb|DW939072.1|DW939072
genomic: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAGgtaaatctcc ... ttctcaccagGAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCTGGAATA
EST: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAG GAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCEST: gi|50331308|gb|CO526434.1|CO526434
genomic: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAGgtaaatctcc ... ttctcaccagGAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGC
EST: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAG GAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCTGGAATAEST: gi|78106604|gb|DV525022.1|DV525022
genomic: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAGgtaaatctcc ... ttctcaccagGAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCTGGAATA
EST: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAG GAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCTGGAATA
genomic: CTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAGgtaaatctcc ... ttctcaccagGAATCTTTGAAAAATGTACTGTTAATCTTTGCCAAGCTGAATGCTGGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTGACATGCAGTTCTTCTGCGGCGACTCGTCTTTTGCAAAGTCCAATCAGgtaaatctccacgcactctgagttcaaacagtgttgtcagatccctgtctgatcttttacctttttattattctcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG