1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGAGAGGAGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggcgccttgtgatgatatataactctttattatcatgtttatgatatgggtagaggttcggttcacctaaagtgggtaaccacactttcttag...
species | Zea mays |
transcript | GRMZM2G068392_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTEST: gi|211170254|gb|FL097983.1|FL097983
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
EST: GCACCCCTTTA-GCCCTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCCACC-ACCCEST: gi|148935027|gb|EC879068.2|EC879068
genomic: GCACCC-TTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGC-ACCCACCC
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTEST: gi|50324142|gb|CO519268.1|CO519268
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTEST: gi|50331565|gb|CO526691.1|CO526691
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTEST: gi|44681890|gb|CK786938.1|CK786938
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTEST: gi|50331308|gb|CO526434.1|CO526434
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCTEST: gi|71433967|gb|DR815017.1|DR815017
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
EST: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAG TACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
genomic: AGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggc ... ttcctaacagTACTCAGAGATTATGGAGCAGATTGACCGCGATGTAAAGCGCACCCACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGAGAGGAGCACCCTTTAAGCCTTGGGAAGACCAGTGCTTGGAATCAGTTTTTTGAGgtacataggcgccttgtgatgatatataactctttattatcatgtttatgatatgggtagaggttcggttcacctaaagtgggtaaccacactttcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA