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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag

Basic information

species Zea mays
transcript GRMZM2G067985_T06
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctat--atttgtttcagctgcagca---------cttcatttcttttaac---tctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||| ||||||||||| || |||||| | |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | |  | || |  || |||    ||| ||  |         ||| | ||  |  |||   | | | ||     |  ||   | || ||| || |||||| | ||||     || ||| |   
CCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCACCTGAGCGCAAGTACAGCGTCTGGATCGGAGGGTCGATCCTAGCCTCACTCAGCACTTTCCAACAGgtaggaagctcctgttcatctgtagttgctacaataattgttaaactttactttctggaacatatgtctcatgattaacctgtggtaacatctaaaatctgttgt-atgtcgtgttggtttgcag-

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||| ||||| || || || || ||||| ||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| |||||   | ||||     ||| || ||  |  | | ||||    | | ||   | ||||     ||| | ||  ||  | |   || ||                         
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgtttt----gtttattgcaaat-tatctcttccacacgtgta--ccaattag-attgaactaaa--catgttttggttttgcag----------------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtatt--ttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctg-aattctgttattatgtgc---cactgatttaccag------
||| || |||||||| |||||||| |||||||| |||||||| ||||||||||||||||| || || || ||| | || || || ||||| ||||||||||| |||| |  |  | | ||  |   |    || ||   |       ||   |||  ||      ||||| | |   || || ||  | | ||||  |||    |  || | |   |       
ACCCAGTAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACCTTCCAACAGgtttgtactgatgtttttttcctgctattctcaacatccccccctcatttgttct--tacaagtaaaatgtattagtttatggaaggcaggtattgagtgtgtactttgttctcttatatgtag

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcactt---catttcttttaactctattatcgccgaaatg-aaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||| ||||| || || || || ||||| ||||| ||||||||||| ||||| || ||||| || || |||||||| ||||| |||||    ||| | ||  ||| || ||  |  ||| |||   |   | |   || |  |||      ||| |  | | ||  | |   || ||                         
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCGTCCCTCAGCACCTTCCAGCAGgtg---attgttta-gtttattacaaat-tagctctttgacgcatgtgccaagtagattgaatttgaactctagaacatgttttggttttgcag----------------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||| ||||| || || || || || || || || ||||||||||| ||||| || ||||| || || |||||||| ||||| |||||   |||||| |     ||  | ||||    |   |      |||| | |  ||  |     |||||   |   ||   |                               
TCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattattttat---catgaattagctctttcgtgtgtgccattttcattgaatgctaaaaaaaatgttgtggttttgcag------------------------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 3
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||| ||||| || || || || || || || || ||||||||||| ||||| || ||||| || || |||||||| |||||||||||  |  | || |||  ||  || ||||    || |   || | |||   |  |||       |||||   |   ||   |                               
TCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgt--gattcttttatcattaatt-agctcttcca-tgtgttccattttcattgattgctaa-aaaatgttgtggttttgcag------------------------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcactt--catttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag-----------------------
||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| || || || ||| | || || || ||||| ||||||||||| |||| |    || ||| || |  || |    ||   |||  |   |  | |      |    |  || | | ||   | || | | ||| | | ||  |   ||| |                           
ACCCAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCATCACTTAGCACCTTCCAACAGgtttgtact---gatgttttttccccctcctattctcaacatcccccctcccacctcccccctttatgtgtacttacaagtaaaatgtattagtttatggaaagcattgagtgtttactttgttctcttatatgcag

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcat--ttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||| |||||||| ||||| || ||||||||||||||||||||||| || || || ||||| || || |||||||||||||| ||||||    |   || |  || | | || |   ||   |  |  ||  || ||       | | ||    |  |||   ||     ||||||   | ||||    ||  | | |||
CCCGAGCAGCATGAAGATTAAGGTCGTGGCACCACCCGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTTGCTTCCCTCAGCACTTTCCAGCAGgtaaaattggactgtcatt-tctaagtttttgcttcttgtggttgattaaatgtagacaactcc----tctaatggtttacattttctgtgtgtgtgtgtg--tgtgtaatcag

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||| || ||||| || || |||||||| ||||||||||||   ||   | |  |  |  ||   |  | |  |    | | ||||  |  |  ||    ||||  |    | || ||  || ||||  | ||||  | | |        
ACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgtaaaaatc--ccaattccgcctct-ttaaaactttcagctccattta--tgaaacatgagtgaaaatactgaaattttg--ttttgtttgtgtgtgtgaatcag-------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: AT3G18780.2 (Arabidopsis thaliana), 5'ss of exon 3
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatattt-gtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || || || || || || || |||||||| ||||| ||||||   |||    | |||| |||||   |           | ||||  |     |||     | ||     || | || || ||    |  |||                   
ACCAAGCAGCATGAAGATTAAGGTCGTTGCACCACCTGAAAGGAAGTACAGTGTCTGGATCGGTGGTTCCATTCTTGCTTCCCTCAGCACATTCCAGCAGgtaaaaattgatcagattttgtttcgaat-----------tctcttacatgcaaattgaaatcaaaggctgattatttatgtatatgttggttacag----------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 3
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttctttt----aactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| ||||| || ||  |||| || |||||||| ||||||||||||   | ||  | |||||||  |           |  | |  |  |     | | | | || |      | | |       |  |||     |||                    
TCCCAGCAGCATGAAGATCAAGGTGGTGGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATATTAGCATCTCTCAGCACATTCCAACAGgtaaaaaattgttttatttgtgcccatgatgtgggtggaatgatagtcaaggagtttgtgattgttagtctcagagtctcattccatttaaaaattgcag----------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 5
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| || || || || || |||||||| ||||| |||||    ||||||  | |||||||  | |       | ||  |  ||| | ||| |||| ||    |||| |  |    ||  || ||||  ||                   
TCCCAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGgtg---attttcattttttgtttttggt----ttttacaaatggtttgattcttttattgc----atgatactaaca-tgctttttgttggtacag----------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtt--tcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
||||   ||||||||||| ||||| || || ||||| ||||||||||||||||| |||||||||||||| ||  | || || ||||| || ||||||||||||| | |||| |||    |||  | || ||||   | | || |  |||   | |||||         |   ||    |||| ||| ||     | |||     | |||  |||
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttcttttatattacagttgcttagttgca-tgcataatctgattt--ttatattactttt----ttgcattttatctgcattttg-----acgtgttggggtttttgcag

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 5
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctat-tatcgccg-------aaatgaaatcacttctgaattctgttattat------gtgccactgatttaccag-----------
||||   ||||||||||| ||||| || || ||||| ||||||||||||||||| |||||||||||||| ||  | || || ||||| || ||||||||||||  | | ||  |    ||| | || ||||   | |  ||| |||||  |||   | ||   |       |||||    |  || |  |  |||| ||  |       |   |    |||||  |           
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgta-atgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaaatgctcgcgtttgtcgaggctgtaatctttctggaatttaatccgtttacttgttgtggtgcag

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 5'ss of exon 3
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatg--------------tattttctatatt---tgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatg----aaatcacttctgaattctgttattatgtgccactgatttaccag--------
 ||    ||||||||||||||||| || || || || |||||||||||||| || ||||| ||||| || ||| | || || |||||||| ||||| ||||||                |||||||||  ||    ||   |  |   | ||||| ||||  ||| |  |   |        |||     |     |  | ||||| ||  ||       | || | |  | |        
GCCGTCAAGCATGAAGATCAAGGTGGTGGCGCCTCCGGAGAGGAAGTACAGCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacat-attgttctttctgtggtgcag

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 3
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtat----gtattttctatatttgtttcagctg-cagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||||||||| ||||| || || |||||||||||||| |||||||| ||||| || ||||| || ||||||||||| ||||||||||||       ||| | | |  | ||||    |  ||||  |   ||||||||   ||  || |||| |                                                 
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATTGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccacaacattcttt-tgctcgtttttcttatcagccttgtttttctttt---tcgtttctcgcag-------------------------------------------------

upper sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 3
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtat----gtattttctatatttgtttcagctg-cagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag
 || |||||||||||||||||||| ||||| || || |||||||||||||| |||||||| ||||| || ||||| || ||||||||||| ||||||||||||       ||| | | |  | ||||    |  ||||  |   ||||||||   ||| || |||| |                                                 
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATCGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccacaacattcttt-tgctcgtttttcttatcagccttgtttttctttt---tcttttttcgcag-------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345926|gb|DN212899.1|DN212899
EST:     GTGTCTGGATAGGAGGGTTGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5055728|gb|AI734615.1|AI734615
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5816331|gb|AI987247.1|AI987247
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|31363976|gb|CD448331.1|CD448331
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33095130|gb|CF055124.1|CF055124
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGT
EST: gi|32850143|gb|CD989824.1|CD989824
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTA
EST: gi|33101849|gb|CF061809.1|CF061809
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTAC
EST: gi|4776292|gb|AI665295.1|AI665295
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTNTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGG
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGG
EST: gi|61117780|gb|DN558741.1|DN558741
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|31612194|gb|CD568816.1|CD568816
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGG
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGG
EST: gi|60345925|gb|DN212898.1|DN212898
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60345930|gb|DN212903.1|DN212903
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33102878|gb|CF062838.1|CF062838
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTAC
EST: gi|33101196|gb|CF061156.1|CF061156
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGT
EST: gi|211469312|gb|FL184440.1|FL184440
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60351548|gb|DN218521.1|DN218521
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|24764594|gb|CA399758.1|CA399758
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1515

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCACCGGAAGTGCTTCTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2197

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCACCGGAAGTGCTTCTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1994

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCACCGGAAGTGCTTCTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1776

ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattt ... gatttaccagATGTGGATATCGAAGGAGGAGTACGACGAGTCTGGCCCGGCAATTGTTCACCGGAAGTGCTTCTAG