1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGCGGGGCAACTACGACACCATGGAGATGGCGCGCATGGCCGCCAGCGCCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattcggcggcaaatgctcacgccttgtttcctttccaccgcaccatcggtgggtgctgcagccccgaagcgacggctggcaatgaatggcgatggcgttttgggtgcag
species | Zea mays |
transcript | GRMZM2G065214_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148935707|gb|EC879751.2|EC879751
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149000961|gb|EE038201.2|EE038201
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148945502|gb|EC890745.2|EC890745
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149082142|gb|EE171322.2|EE171322
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|71428627|gb|DR809677.1|DR809677
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|76289986|gb|DV029554.1|DV029554
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148951983|gb|EC897765.2|EC897765
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149106764|gb|EE188660.2|EE188660
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149083030|gb|EE172281.2|EE172281
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|91873912|gb|EB403869.1|EB403869
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148939327|gb|EC883844.2|EC883844
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|101396441|gb|EB820147.1|EB820147
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|71430899|gb|DR811949.1|DR811949
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149110480|gb|EE294148.2|EE294148
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149206197|gb|ES701793.1|ES701793
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|101396001|gb|EB819929.1|EB819929
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148995635|gb|EE034843.2|EE034843
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148955911|gb|EC901621.2|EC901621
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|50325030|gb|CO520156.1|CO520156
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148936017|gb|EC880073.2|EC880073
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148961342|gb|EE012071.2|EE012071
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148979230|gb|EE026592.2|EE026592
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149088497|gb|EE177606.2|EE177606
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149088291|gb|EE177386.2|EE177386
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148956647|gb|EC902502.2|EC902502
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACGTCAACGACAACEST: gi|149005317|gb|EE039868.2|EE039868
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|148952040|gb|EC897826.2|EC897826
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149109740|gb|EE293528.2|EE293528
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|91875516|gb|EB405473.1|EB405473
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|74237975|gb|DT645889.1|DT645889
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAACEST: gi|149073459|gb|EE161764.2|EE161764
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
EST: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAG ATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
genomic: CCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattc ... ttgggtgcagATCGTGAGGGCACTCGAGGGGGACATCTCGCTGGAGGACCTCAACGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCGGGGCAACTACGACACCATGGAGATGGCGCGCATGGCCGCCAGCGCCGCGGCAGCCGTGCGCCACTCGGCCAAGAAGCGCCCCAAGATGAGTCAGgtaggtattcggcggcaaatgctcacgccttgtttcctttccaccgcaccatcggtgggtgctgcagccccgaagcgacggctggcaatgaatggcgatggcgttttgggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG