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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaagcacattcaaaggagtttttacctattaatgatatttatctgacgaaagaaaaaaaacataatccgctgaatgttttcttcgcttcag

Basic information

species Zea mays
transcript GRMZM2G065012_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 4
CTGGTTTCTCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaa-ttaaagcac------attcaaaggagtttttacctattaatg----------atattta-----tctgacgaaagaaaaaaaacataatccgctgaatgttttcttcgcttcag----------------------------------------
||||||||||| |||||||| ||||| || || | ||| ||||||||| || |||||||||||  | | |||       |||  |   | |||||      |||||          | || |      |||| |   ||  |  ||  ||| |   || |    |   |    ||| |                                        
CTGGTTTCTCTTGCACAAGCTGGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGgtaaaactgatgcaattagtaattatatatacttttttttagataatggaaataggttacatctccggcctctgcccgtaggcagtaattata-tatacttagcactagttatatttctgaagaaactattggcatactcaccatcaccttttacatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283614|gb|DV023182.1|DV023182
EST:     TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG                         ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
genomic: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaa ... ttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
EST: gi|71333237|gb|DR803673.1|DR803673
EST:     TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG                         ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN
genomic: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaa ... ttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA
EST: gi|71769027|gb|DR966964.1|DR966964
EST:     TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAG                         ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN
genomic: TCTCGCACAAGCAGGGAACGAAATCAATCAAGACACCCTTCCAAATGCAGgtaaattaaa ... ttcgcttcagATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA