1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTCCTATCTTCTAGATGCTCAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttcatcagatgtttcttgtccagcatattattcttctttttaggcagactgagtactcttagcatatttgctgtgattgtgctatttgaaagagataatgtcatgatacttgctgcag
species | Zea mays |
transcript | GRMZM2G064197_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|50333124|gb|CO528250.1|CO528250
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|74233857|gb|DT641771.1|DT641771
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: TGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|87156993|gb|DY401782.1|DY401782
genomic: TGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCTCTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|74232734|gb|DT640648.1|DT640648
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|22473367|gb|BU037847.1|BU037847
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCTCTGAGAGCGCAGATGGAEST: gi|26558692|gb|CA830927.1|CA830927
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGA
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCTCTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|76918384|gb|DV167269.1|DV167269
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|76292002|gb|DV031570.1|DV031570
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|78076222|gb|DV504656.1|DV504656
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: GTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|91051798|gb|EB162216.1|EB162216
genomic: GTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAACACTGAGAGCGCAGATGGAGGTGCAACGAAGEST: gi|74233858|gb|DT641772.1|DT641772
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAGEST: gi|71436515|gb|DR817565.1|DR817565
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: AGAGTGGAATGAGTGTGTCCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAAGTGCA-CGAAEST: gi|88755721|gb|DY539862.1|DY539862
genomic: AAAGTGGAATGAGTGTGTCCCC-TAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAA-GTGCAACGAA
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAAEST: gi|74232735|gb|DT640649.1|DT640649
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
EST: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGA AAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
genomic: CAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttca ... cttgctgcagAAGCCAAGAAGTTAAAGAAGCACTGAGAGCGCAGATGGAAGTGCAACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCTATCTTCTAGATGCTCAAAGTGGAATGAGTGTGTCCCCTAGAGTTGCTGCCCAGGATATGAAAGAgtatggttcatcagatgtttcttgtccagcatattattcttctttttaggcagactgagtactcttagcatatttgctgtgattgtgctatttgaaagagataatgtcatgatacttgctgcag
- - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - TGCTGC