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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctactcgtagaccttctgtgacgaaccttgtaaagtcgagggtatctgatgccttatctgctgttcttttggccaatgctagcaaatagtgtcaa...

Basic information

species Zea mays
transcript GRMZM2G064023_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 4
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctactcg-tagaccttctg-----tgacg-aaccttgtaaagtcgagggtatctgatgccttatctgctgttctt-ttggccaatgctagcaaatagtgtcaa
||||| ||||||||| |||||||||||||||| ||||| |||||||| ||||   |||  | |||      | ||  ||  ||| |||||  | || |||   | | |||||| |  || ||  |   |     ||||   |        
GATCTCAAGTCCCAGCTGCAGGAATTGATTCCTGAACAACAGgtttgttactttctagcacgtctaataattcacacaaagttggaaagtatatggcatccagttctttatctaccctttttgctttactgctttagcctgt--------

upper sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 3
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgt-----ttgctactcg-tagaccttctg------tgacgaaccttgtaaagtcgagggtatctgatgccttatctgctgttcttttggccaatgctagcaaatagtgtcaa
||||||||||||||| |||||||||||||||| || || |||||     ||| |||||| |||  | |||        ||| ||  ||| || ||    || |||  || ||||||||  |  | |||| ||    ||    ||          
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaag-ttgaaatgtttctggcatccaattccttatct-ttactttttttgctttagcctataa----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149090362|gb|EE179668.2|EE179668
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|149082725|gb|EE171943.2|EE171943
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|149077813|gb|EE166538.2|EE166538
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GACCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|8103179|gb|AW927835.1|AW927835
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|213174510|gb|FM184748.1|FM184748
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|211399063|gb|FL099822.1|FL099822
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|71450120|gb|DR831170.1|DR831170
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
EST: gi|76287895|gb|DV027463.1|DV027463
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAG                         GATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgtttgctact ... cttgttacagGATCGCCTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAAC