1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GACCGCTTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatatactgcttatcaattgcctatatatgtatagctttgtcgcttttctaggataatgttcttgaataatgttcctgcag
species | Zea mays |
transcript | GRMZM2G063909_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG GTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTAEST: gi|4609695|gb|AI600534.1|AI600534
genomic: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatata ... gttcctgcagGTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTA
EST: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG GTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTAEST: gi|211161741|gb|FL193319.1|FL193319
genomic: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatata ... gttcctgcagGTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTA
EST: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG GTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTAEST: gi|149101097|gb|EE187201.2|EE187201
genomic: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatata ... gttcctgcagGTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTA
EST: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG GTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTAEST: gi|78088374|gb|DV516767.1|DV516767
genomic: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatata ... gttcctgcagGTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTA
EST: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATG GTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTA
genomic: TTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatata ... gttcctgcagGTCCTTGGTGGAATGAGAGGGATCATTGGAATGCTTTGGGAGACATCCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCGCTTAAAGAAGCTTAAATCAGAGCATGGGAAGGTTCAGCTTGGAAACATAACTGTGGATATGgtataatatactgcttatcaattgcctatatatgtatagctttgtcgcttttctaggataatgttcttgaataatgttcctgcag
- - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - TCAGCT