1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCAAGAACCCATGGCCAAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttatgcttgtgatttagtctagatagcaatttagtcctctttttacttagcaaatctagttctgagtgagcactaatgtttggaacactaactgtgcag
species | Zea mays |
transcript | GRMZM2G063851_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|40335071|gb|CK369141.1|CK369141
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|84908305|gb|DW404183.1|DW404183
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|111433800|gb|EE298053.1|EE298053
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGGGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|89248619|gb|DY620405.1|DY620405
genomic: GTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|148929642|gb|EC876096.2|EC876096
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|76010584|gb|DT937754.1|DT937754
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|31363851|gb|CD448206.1|CD448206
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|149100798|gb|EE186892.2|EE186892
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAEST: gi|6973552|gb|AW438288.1|AW438288
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCTATGGGGATAGGATCTCEST: gi|110202089|gb|EC883986.1|EC883986
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGC-ATGGGGATAGGATCTC
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|71771088|gb|DR969025.1|DR969025
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|78021514|gb|DV489901.1|DV489901
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|37380261|gb|CF626924.1|CF626924
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|5901109|gb|AW042209.1|AW042209
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|241994796|gb|GR421149.1|GR421149
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGCGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|110954440|gb|EE174492.1|EE174492
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATTTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAEST: gi|148991805|gb|EE033386.2|EE033386
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|93284645|gb|EB676909.1|EB676909
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|37376636|gb|CF624868.1|CF624868
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGTTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|149082973|gb|EE172210.2|EE172210
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAEST: gi|60395299|gb|DN228168.1|DN228168
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
EST: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACG GTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
genomic: GATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttat ... aactgtgcagGTATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGAACCCATGGCCAAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttatgcttgtgatttagtctagatagcaatttagtcctctttttacttagcaaatctagttctgagtgagcactaatgtttggaacactaactgtgcag
- - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC