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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcgcgtagactatctgtaaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta...

Basic information

species Zea mays
transcript GRMZM2G063851_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 4
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcgcg-tagactatctg-taaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta
||||| ||||||||| |||||||||||||||| |||||||||||||| | |    |||    |||  ||| ||    ||||| | |||||   |||     |  |  |   | || | | | | ||||    |  ||||   | 
GATCTCAAGTCCCAGCTGCAGGAATTGATTCCTGAACAACAGgtttgttactttctagcacgtctaataattcacacaaagttggaaagtatatggcatccagttctt-tatctaccctttttgctttactgctttagcctgt-

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 3
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgt-----ttgctgcgcg-tagactatctgtaaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta
||||||||||||||| |||||||||||||||| || ||||||||     ||| | | || |||   ||||   |||     ||||| |||| |||  |||     |  |  |    ||  ||| | ||  ||||||| |||       
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaagttgaaatgtttctggcatccaattccttatctttactttttttgctttagcctataa------

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 4
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcgcgtagactatctgtaaatc--ttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta
|| ||| | ||||||||| ||||||||||||| |||||||||||||| |   | |    | |   |  ||   ||   |   | |||| |||||        | |   |  ||| ||  |  | |   |||    | | |    
GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgatttacttcttttgttactttattagtttccatccctaaaatttctttcttttcttttttggtgtttttccccattcccaatagtgtgttgaatt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592469|gb|CV071615.1|CV071615
EST:     GATCCTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACTCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|32868179|gb|CF007861.1|CF007861
EST:     CCGATCTCGATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: CCGATCTCGATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|78109451|gb|DV527867.1|DV527867
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|74035022|gb|DT535512.1|DT535512
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC