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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcgcgtagactatctgtaaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta...

Basic information

species Zea mays
transcript GRMZM2G063851_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 4
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcgcg-tagactatctg-taaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta
||||| ||||||||| |||||||||||||||| |||||||||||||| | |    |||    |||  ||| ||    ||||| | |||||   |||     |  |  |   | || | | | | ||||    |  ||||   | 
GATCTCAAGTCCCAGCTGCAGGAATTGATTCCTGAACAACAGgtttgttactttctagcacgtctaataattcacacaaagttggaaagtatatggcatccagttctt-tatctaccctttttgctttactgctttagcctgt-

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 3
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgt-----ttgctgcgcg-tagactatctgtaaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta
||||||||||||||| |||||||||||||||| || ||||||||     ||| | | || |||   ||||   |||     ||||| |||| |||  |||     |  |  |    ||  ||| | ||  ||||||| |||       
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaagttgaaatgtttctggcatccaattccttatctttactttttttgctttagcctataa------

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 4
GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcgcgtagactatctgtaaatc--ttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagcta
|| ||| | ||||||||| ||||||||||||| |||||||||||||| |   | |    | |   |  ||   ||   |   | |||| |||||        | |   |  ||| ||  |  | |   |||    | | |    
GACCTTCATTCCCAGTTGAAGGAATTGATTCCAGAACAACAGgtttgatttacttcttttgttactttattagtttccatccctaaaatttctttcttttcttttttggtgtttttccccattcccaatagtgtgttgaatt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505526|gb|FL228165.1|FL228165
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507876|gb|FL228171.1|FL228171
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507874|gb|FL228169.1|FL228169
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211059244|gb|FL131321.1|FL131321
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|148932412|gb|EC876097.2|EC876097
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507879|gb|FL228174.1|FL228174
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|93284646|gb|EB676910.1|EB676910
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211510249|gb|FL228196.1|FL228196
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|148974563|gb|EE025351.2|EE025351
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211510246|gb|FL228193.1|FL228193
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507880|gb|FL228175.1|FL228175
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507878|gb|FL228173.1|FL228173
EST:     GATCTTAAGTCCCCAGTTGCAGGAATTGATTCCCGGAACAACAG                         GATCGCTTAAAGAAGCCTCAAGTCAGAGCATGGAAAGACCCCAGCTTGGAA
genomic: GATCTTAAGTCCC-AGTTGCAGGAATTGATTCC-GGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGC-TCAAGTCAGAGCATGGAAAGACCC-AGCTTGGAA
EST: gi|211510237|gb|FL228184.1|FL228184
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507873|gb|FL228168.1|FL228168
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507884|gb|FL228179.1|FL228179
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211507875|gb|FL228170.1|FL228170
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: gi|211505527|gb|FL228166.1|FL228166
EST:     GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG                         GATCGCTTAAAGAAGCTCAAGTCTGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC