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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacccctcctgcactataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcattaatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag

Basic information

species Zea mays
transcript GRMZM2G063792_T06
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 6
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacccctcct---gcacta--taatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcattaatccattactcatgcttgtactccagggagtatctaacatc--atgtgat------gtttttgtatttaccctctctctgtaatgtgttgcag
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |  |    |||||  ||    || || |||| | ||    |   |   |||||   | |||    |   | || | ||  |     |  | ||    ||| || |||| | |  |  || |      |||| | |||||| | ||||| |    ||||||||||
GGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttccttctgttactcttattaccacactaattagcagatctagattattcttccataaattgcatgctgtcat-cagttgatagctgatgctttctttgc-ttcatccttttaggaatacctaatacctaacctgctttgtttgtttatatatttatcttctctgtaatgtgtgttgcag

upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G02740.1 (Glycine max), 5'ss of exon 5
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacc--cctcctgcactataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcat-taatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag
|||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||  || || || ||| ||| ||||||||| ||||||||||||||||||||||    | ||  ||  | || |  | |  ||  ||||       |||||||    || || ||||||  |     ||    ||    ||| |  |  ||     || ||   |  |   |  || | |  |    || | |   ||| || | |   ||| | | | |  |  |||||
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactagcttctttttgagctatttcttccatacatttcactt-tggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaat-agtatctttttatgaatt--tgcag

upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacc--cctcctgcactataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcat-taatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag
|||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||  || || || ||| ||| || |||||| ||||||||||||||||||||||    | ||  ||  | || |  | |  ||  ||||       |||||||    || ||  |||||  |     ||    ||    | |    |  ||     || ||   |  |   |  || | |  ||    || | |||| |      ||  | ||| | ||     ||||||
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactagcttctttttgagctatttcttccatacatttcactt-tgttttatccttaactgataatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttcta-----actgtatctttttatgaatttgcag

upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 6
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacccctcctgcactataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcattaatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag
|||||||||||||| ||||||||  ||||||||||||| |||||||| ||| |||  ||||| || ||| ||| || |||||||||||||||| ||||||||||||     ||| ||| |  |     |    |  | |    || |     | ||        |  |  | | ||| |  ||||||    ||  || |   ||     ||                                                                    
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCAGTTGATCTAGTCCGCGAGATTGGCAGACAACTGTTGGAATGTGTAGCATgtgtgtattt-gttatttgtgctgtttatttatcttttt----caaacttgatggtaacagttctagtaggagatgctt--cagcct----tttgtctagctctgggattt--------------------------------------------------------------------

upper sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 6
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacccctcctgca--ctataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcattaatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag
|||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||  || || || ||| ||| || |||||||||||||||| ||||||||||||    | | ||||   |      |  | ||  | ||||||| | | | |    |||||| |||   | |  |  | ||  |  ||||    ||   | |                                                                             
GGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATgtgtgtagtaaatacttttgctagtttttttttcaatccataatgcgtttgcct----tttgtgtattccatctcttatactgttgaatgtctactatttgtaa-----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32838009|gb|CD977687.1|CD977687
EST:     AATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCAT                         TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTC
genomic: AATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcac ... tgtgttgcagTTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTC
EST: gi|60345282|gb|DN212255.1|DN212255
EST:     AATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCAT                         TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTC
genomic: AATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcac ... tgtgttgcagTTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTC
EST: gi|93015378|gb|EB640898.1|EB640898
EST:     AATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCAT                         TTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTC
genomic: AATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcac ... tgtgttgcagTTATGCATGAATTGCGCCTCATACACACTGATTTAAAGCCTGAGAACATTC