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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatcaatcacctacgttcctactaacaaataattattttggtttaccttaggcaggtgacatgacattccactgtttcgtttcaattatcag

Basic information

species Zea mays
transcript GRMZM2G063340_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063340_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g05580.1 (Oryza sativa), 5'ss of exon 4
CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatcaatcacctacgttcctactaacaaataattattttggtttaccttaggcaggtgacatgacattccactgtttcgtttcaattatcag
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |  ||| ||| |  || ||   |||   || || |  |||     |      ||||  |    | |  ||   |||||   ||||| ||  |||
CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGTTGTCAAGgtaactaatcgatccctcaccttaacacttggaattattcctttgaagat------ggcaatt--tgtaatgtttggctgttcattttcatttcccag

upper sequence: GRMZM2G063340_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatcaatcacctacgttcctact------aacaaataattattttggtttaccttaggcaggtgacatgacattccactgtttcgtttcaattatcag----------------
|||||||||||||| ||||||||||| |||||||||||||| || ||||| ||  ||||  |||||||| || |||  |     |   || || |      | || |  |   | | | |       | |    ||| |       |   || ||  |||   |  |                   
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctctagatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14997252|gb|BI319257.1|BI319257
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAG
EST: gi|60336720|gb|DN203693.1|DN203693
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|166661989|gb|EG160390.1|EG160390
EST:     AAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: AAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|29945536|gb|CB815689.1|CB815689
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60351346|gb|DN218319.1|DN218319
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|15632498|gb|BI679591.1|BI679591
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|166654972|gb|EG285655.1|EG285655
EST:     GTCGTCGTCAAG                         GACTACGGTGAAGAAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA
genomic: GTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAG-AATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA
EST: gi|14717663|gb|BI245313.1|BI245313
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|32825980|gb|CD965658.1|CD965658
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTA
EST: gi|211029079|gb|FL132095.1|FL132095
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTC-TGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCA
EST: gi|211026633|gb|FL132092.1|FL132092
EST:     TGAGGGCAAGGCAAGGAAGGTTGTAGGCKMGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGA
genomic: TGAGGGCAAGGCAAGGAAGGTTGTAGGCT-GCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGA
EST: gi|19770525|gb|BQ035246.1|BQ035246
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|21331801|gb|BQ487182.1|BQ487182
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60352038|gb|DN219011.1|DN219011
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211430168|gb|FL109543.1|FL109543
EST:     CTGAGGGCAANGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCT
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCT
EST: gi|60396925|gb|DN229744.1|DN229744
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211432763|gb|FL109552.1|FL109552
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA-
EST: gi|32826689|gb|CD966367.1|CD966367
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGC
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGC
EST: gi|31998121|gb|CD661935.1|CD661935
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|76294113|gb|DV033681.1|DV033681
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|87153459|gb|DY398248.1|DY398248
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|31910829|gb|CD651619.1|CD651619
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|71449126|gb|DR830176.1|DR830176
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211244101|gb|FL109410.1|FL109410
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGWTCCTGNGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCA
EST: gi|60357360|gb|DN224333.1|DN224333
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211049234|gb|FL320170.1|FL320170
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|28361837|gb|CB240193.1|CB240193
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|67033774|gb|CO462523.1|CO462523
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|9733442|gb|BE512299.1|BE512299
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|116828295|gb|EC856579.1|EC856579
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACAGTGAAGAATCTGAGGGCCCTTAACAT
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCC-TTAACAT
EST: gi|14244243|gb|BG842257.2|BG842257
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATATTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|32794117|gb|CD946353.1|CD946353
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTA
EST: gi|91876338|gb|EB406295.1|EB406295
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60356516|gb|DN223489.1|DN223489
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|71758647|gb|DR956584.1|DR956584
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|9461606|gb|BE453815.1|BE453815
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60357872|gb|DN224845.1|DN224845
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60340306|gb|DN207279.1|DN207279
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|20301310|gb|BQ164253.1|BQ164253
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211235155|gb|FL109352.1|FL109352
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAA
EST: gi|22473012|gb|BU037492.1|BU037492
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|9794291|gb|BE552599.1|BE552599
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|20508196|gb|BQ279934.1|BQ279934
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|50330118|gb|CO525244.1|CO525244
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60347904|gb|DN214877.1|DN214877
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGACTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|9742695|gb|BE518843.1|BE518843
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|166614943|gb|EG293304.1|EG293304
EST:     CCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|20508314|gb|BQ279980.1|BQ279980
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|101385674|gb|EB814885.1|EB814885
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|32907115|gb|CF011928.1|CF011928
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60338000|gb|DN204973.1|DN204973
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|20300491|gb|BQ163434.1|BQ163434
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGNGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|91876339|gb|EB406296.1|EB406296
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211435371|gb|FL109569.1|FL109569
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|166683102|gb|EG042464.1|EG042464
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGT
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGT
EST: gi|15312968|gb|BI478487.1|BI478487
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|32827585|gb|CD967263.1|CD967263
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGACTTA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTA
EST: gi|20508312|gb|BQ279979.1|BQ279979
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGACATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGA-ATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA
EST: gi|9742936|gb|BE519084.1|BE519084
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|28361649|gb|CB240005.1|CB240005
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|166670062|gb|EG316134.1|EG316134
EST:     GTCGTTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA
genomic: GTCG-TCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAA
EST: gi|60356409|gb|DN223382.1|DN223382
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATTTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|211250807|gb|FL109459.1|FL109459
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTAT
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTAT
EST: gi|60357902|gb|DN224875.1|DN224875
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|89754361|gb|DY685151.1|DY685151
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATTTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60341800|gb|DN208773.1|DN208773
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|166632196|gb|EG115960.1|EG115960
EST:     GTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: GTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|20508200|gb|BQ279935.1|BQ279935
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGTGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|32908804|gb|CF013617.1|CF013617
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|60347600|gb|DN214573.1|DN214573
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
EST: gi|32908635|gb|CF013448.1|CF013448
EST:     CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAG                         GACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG
genomic: CTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 35 (upstream exon), 48 (downstream exon)
Score: 74

CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAGTCGCACTAGATGTGTGACATGTTTCAGTGATACTCTTGATTTGGACCTG


Block sizes: 35 (upstream exon), 49 (downstream exon)
Score: 32

CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAGTCGCACTAGATGTGTGACATGTTTCAGTGATACTCTTGATTTGGACCTG


Block sizes: 35 (upstream exon), 49 (downstream exon)
Score: 36

CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAGTCGCACTAGATGTGTGACATGTTTCAGTGATACTCTTGATTTGGACCTG


Block sizes: 35 (upstream exon), 48 (downstream exon)
Score: 18

CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatc ... caattatcagGACTACGGTGAAGAATCTGAGGGCCTTAACATAGTGCAGGAGTATGTCAAGTCGCACTAGATGTGTGACATGTTTCAGTGATACTCTTGATTTGGACCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTAGGCTGCTCCTGCGTCGTCGTCAAGgtagcatatcaatcacctacgttcctactaacaaataattattttggtttaccttaggcaggtgacatgacattccactgtttcgtttcaattatcag

- - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - -  GCTGCT