ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagttgcttatctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag

Basic information

species	Zea mays
transcript	GRMZM2G063192_T01
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G01450.1 (Glycine max), 5'ss of exon 3

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagtt--gcttatctgcattgagtgcatgcatgctatg-ctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
||| || || ||||| ||  | ||  | ||||| ||||| || ||||||||||||||||| || ||||||||||| ||  | || || |||||||| ||||| |  || |   ||  |   | | | |    ||   ||  ||      | || |    ||  ||||||||   ||    |  |  ||                     
TGGTTTTACCCAGAATCAGTTAACACTTTGGAAATACCCCTCAATGGTGAAGATGGCTGAGCTCAATGGCCATACTTCAAGAGTTCTTTTCATGGCCCAGgtaattttttctcgagcacaaacctgattgatttgattgtcttattatgaggcttttcctgattagtgtgatgtcaac-ttccttcag---------------------

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv16s0039g02510.t01 (Vitis vinifera), 5'ss of exon 4

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagtt-aacagttgcttatctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
||| ||  ||||||| ||||| ||  |||||||||||||||| |||||||||||  |||| |||| ||| ||||| ||  | || || ||||||||||||||   | | |  |   ||||| |     || || || | |   | |   |    |||||| | | ||    | |    ||| | |||   |||     |||      
TGGCTTTTCACAGAATCAACTTACTCTGTGGAAGTACCCATCAATGGTGAAGATTACTGAGCTTACTGGTCATACATCCAGAGTTCTTTTCATGGCTCAGgtactaatatggatcttagtttagtgaatgtttctcggtaacaaatctttatg-gctatgtttg-gttcccagaaaattta-agagtaaatgcaaagaaaaga----

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0107g00320.t01 (Vitis vinifera), 5'ss of exon 4

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagttgcttatctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
 || || |||||||| ||||||||  ||||||||||||||||||||||||| ||||| || |||| ||| ||||| || || ||||| ||||||||||||||   | | |  | | |   |   |  | ||| |  |   |    | | | |  | ||    | ||    |  || | |   |   | || |  |           
CGGTTTTACACAGAATCAACTCACTCTGTGGAAGTACCCATCGATGGTGAAAATGGCAGAGCTTACTGGTCATACATCCCGAGTCCTTTTCATGGCTCAGgtactaatataaaaattcccttctatcttcttgttggtgattttcgta-gtagccaatctgcgggttctgatttttccttgttctcttttaccag-----------

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S8_56V6.1 (Physcomitrella patens), 5'ss of exon 4

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtga--aattcttc--agacta-gttaacagttgcttatc-tgcatt----gagtgcatgcatgctatgcta-gtgt-gagaacattgcttatatagttcttgctggttaaact-gcag
||| ||||  ||||| ||| |   | |||||||||| ||||||||||| |||||||||||| | |  || || || ||  | ||  |   | | || ||||| |  ||||   |  |||| |  | |   || |||  || || |||    |  ||| | |||    | ||  | |  | | |  |  || | | |    | |     |   || ||||
TGGGTTCAGCCAGAATCAATTGTGCCTGTGGAAGTATCCATCGATGGTCAAGATGGCTGAATTCACAGGGCACACATCCAGGGTGTTACACCTAGCACAGgttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttcatcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcag

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ31840 (Selaginella moellendorffii), 5'ss of exon 3

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagttgcttatctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
||||||||  ||||||||  | | ||||||||||||||| || |||||||||||||| |||||||  || || || ||  | ||| |   | |||| ||||| | ||  |   |  | |||  ||   |||  | |  |   |     ||   | |                                                  
TGGATTCAGCCAGAACCAGTTGATCTTGTGGAAGTACCCGTCTATGGTGAAGATGGCGGAACTTACCGGTCACACATCCAGAGTCTTGCACTTGGCGCAGgt-agatgttcttgcttggtttccatcagctggtatctaaccacgctgtgttcgttgcag----------------------------------------------

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ13752 (Selaginella moellendorffii), 5'ss of exon 3

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagttgctt---atctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
 || ||||  |||||||| ||||   | ||||||||||| ||||||||||||||||| || || |  || || |||||  | |||||    ||||| |||||    | | |     |  |    |  |||||   |  | | ||  ||   ||||                                                      
CGGCTTCAGCCAGAACCAGCTCATTCTCTGGAAGTACCCGTCGATGGTGAAGATGGCGGAGCTGACCGGGCACACCTCGAGGGTCCTGCATATGGCACAGgtctgctccctttctttcttaggaaagtgcttgagacataccttt-gtatttgcag-----------------------------------------------------

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ29191 (Selaginella moellendorffii), 5'ss of exon 3

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagttgcttatctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
 || ||||  |||||||| ||||   | ||||||||||| ||||||||||||||||| || || |  || || |||||  | |||||    ||||| |||||    | |      ||||||     ||  || |  | |   ||||| ||     ||   | || |  | |                                   
CGGCTTCAGCCAGAACCAGCTCATTCTCTGGAAGTACCCGTCGATGGTGAAGATGGCGGAGCTGACCGGGCACACCTCGAGGGTCCTGCATATGGCACAGgtctgctcc------ctagtttttctttctttcttagga--aagtgcttgagacatacctttgtatttgcag----------------------------------

upper sequence: GRMZM2G063192_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ38024 (Selaginella moellendorffii), 5'ss of exon 3

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattcttcagactagttaacagttgcttatctgcattgagtgcatgcatgctatgctagtgtgagaacattgcttatatagttcttgctggttaaactgcag
||||||||  ||||||||  | | ||||||||||||||| || |||||||||||||| |||||||  || || || ||  | ||| |   | |||| ||||| | ||  |   |  | |||      | | | || || | |  |  |  || ||| || | ||   ||                                     
TGGATTCAGCCAGAACCAGTTGATCTTGTGGAAGTACCCGTCTATGGTGAAGATGGCGGAACTTACCGGTCACACGTCCAGAGTCTTGCACTTGGCGCAGgt-agatgttcttgcttggtt------tccatgtcagc-tggtatctaaccacgctgtgttcgttgcag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|37394528|gb|CF634540.1|CF634540

EST:     GGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         TGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: GGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|110202735|gb|EC884632.1|EC884632

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTTTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|149095468|gb|EE181116.2|EE181116

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|149100953|gb|EE187050.2|EE187050

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTTTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|110200330|gb|EC882227.1|EC882227

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTTTTCATGGTTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|110208507|gb|EC890404.1|EC890404

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60339227|gb|DN206200.1|DN206200

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|93283041|gb|EB675305.1|EB675305

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60355229|gb|DN222202.1|DN222202

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|148951592|gb|EC897327.2|EC897327

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTTTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|4621663|gb|AI612496.1|AI612496

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|211094285|gb|FL471105.1|FL471105

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|88750043|gb|DY534184.1|DY534184

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGTTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60356758|gb|DN223731.1|DN223731

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60397177|gb|DN229993.1|DN229993

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60354385|gb|DN221358.1|DN221358

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60342791|gb|DN209764.1|DN209764

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|83279260|gb|DV943268.1|DV943268

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60343232|gb|DN210205.1|DN210205

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|4225449|gb|AI395902.1|AI395902

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|149113104|gb|EE295867.2|EE295867

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|60337787|gb|DN204760.1|DN204760

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|110946074|gb|EE166231.1|EE166231

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|149043944|gb|EE047425.2|EE047425

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|16926664|gb|BM079732.1|BM079732

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|211006919|gb|FL435027.1|FL435027

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

EST: gi|16926133|gb|BM079201.1|BM079201

EST:     AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAG                         AGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG
genomic: AGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 284

TGGATTCACACAGAACCAACTCACCTTGTGGAAGTACCCATCGATGGTGAAGATGGCTGAACTTAATGGCCATACCTCTCGCGTCCTCTTCATGGCTCAGgtgaaattct ... taaactgcagAGTCCTGATGGATGCACAGTAGCGTCGGCTGCTGCTGACGAGACCCTCCGGTTCTGGAACGTTTTTGGAACCCCTGAAACGCCCAAGCCTGCAGCCAAAG

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 16

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 25