Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttttcacttgcttgctcagtgtttaatttgttttttcctttacag

Basic information

species Zea mays
transcript GRMZM2G061745_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 4
TTATGTTCCTAATCCAGTCTTGGTGATTATTGA-TGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGG-AGGAGGTTAAAGAGgt--acataacttgctgagttgctggagtttttcacttgcttgctcagtgt-ttaatttgtttt-ttcctttacag--------------
                            ||||| ||| |||||||||||| | || ||||| |||||||| ||||| ||||||| ||||||||||||||||   |||    |    ||  |||||    |||    ||||||  || ||| ||  | |||||  ||  | ||||               
----------------------------ATTGAATGTTCAACCCAAGGAGTTAGGAATACCCACCAAAGCATACTATGCTGTGGCAGGAGGTTAAAGAGGTTAGCATGTGATCTCAAGAAGCTGGCAGgtttattgtgcttgtccattgtcttgttctgtttcattaatgtacatgttgtcttttacag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G34980.1 (Glycine max), 5'ss of exon 4
TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttttcacttgcttgctcagtgtttaatttgttttttcctttacag----------------------------------------------------------------------------------------------------
 |||||||| ||||| |||||||| || ||||||||  |||| |||||  |||| || || || ||||| || || || || || ||||||||||||||||| |      | |||   |    | ||| |      |  |   | | |  | |   |  |  ||| ||                                                                                                     
CTATGTTCCAAATCCTGTCTTGGTTATAATTGATGTTGAACCTAAGGAATTGGGAATCCCAACAAAAGCATATTATGCCGTTGAAGAGGTTAAAGAGgtacaaa-----ttaagtccgtcatatctttgatagaaatcttatatatctgttcttgctgatattttgcaaaagtaatcctgctgtatgtgatggtgggacgggagctagtgtttgctcaacactaaattagtactcaaagaaactaatatatagtttattctgagtacag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G03360.1 (Glycine max), 5'ss of exon 4
-TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttttcacttgcttgctcagtgtttaatttgttttttcctttacag---------------------------------------------------------------------------------------------------
  |||||||| ||||| |||||||| || ||||||||  |||| |||||  |||| || || || ||||| || || ||||| || ||||||||||||||||| |      | |||   |    | ||| |     ||  |   | | |  | |   | ||  ||| ||                                                                                                    
GCTATGTTCCAAATCCTGTCTTGGTTATAATTGATGTTGAACCTAAGGAATTGGGAATCCCAACAAAAGCATATTATGCTGTTGAAGAGGTTAAAGAggtacaaa-----ttaagtccttcatatctttgatagaattcttatatttctgttcttgctgttattttgcaaaagtaatcctgctgcatgtgatagtgggaggggagctagtgtttgctcaacactaaattagtattcaaaggaactgacatatagtttattctgtgtaca

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G11270.2 (Arabidopsis thaliana), 5'ss of exon 4
TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttttcacttgct----tgctcagt---gtttaatttgttt--tttcctttacag-----------------------------------------------------
 || ||||| |||||||| ||||| ||||||||||||||||| || || || || || || || ||||| ||||| || || |||||||| ||||||||| ||| |  ||  | || ||  |   ||| |||||||    || | |||    | | |  |  ||  ||| ||||                                                         
CTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGgtgaaagaggtaaata-ccagccaattttcta-accattttacttgctcgactgttaagttgcatctgacatacttgatttactttctgcattagttatatccatatatctaattgccttgatccgaacttctctctctgcag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgta-----cataacttgctgagt----------tgctggagtttttcacttgct-tgctcagtgtttaatttg-----ttttttcctttacag
 |||||||| ||||||||| |||| |||||||||||||| || || || || || || || |||||||| ||||| || |||||||||||||| ||||||     || | | | |  | |          |  |  |||| |   |||  | |  ||||    | |||       | |||| || | |||
CTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAAAGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGgtaagatacaaacccttccaaatattgtcccttttgtaaagttgtatgcttattataatcagatgctgattaaacacttctttttctctccag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0007g01980.t01 (Vitis vinifera), 5'ss of exon 4
TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttt-tcacttgcttgctcagtgtttaatttgttttttcctttacag----------------------------------------------------------------------------------
 |||||||| ||||| ||||| || || |||||||||||||| |||||||| || || || ||||| || || || ||||| ||||| || ||||||||| | ||||       |   |   ||||| | | ||   || |   || || ||  |||   |  | | |||                                                                                  
CTATGTTCCCAATCCTGTCTTAGTCATAATTGATGTCCAACCAAAGGAGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGgta-agaactaagaacatctttaatgttttcttatttagctggtgcatgattgatcagttacattttattcagcttgaatcttgctgacttactgtctaagacatttcattaaaatgacttgttggtttactctaatgcttgcttatggttacag

upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0025g01490.t01 (Vitis vinifera), 5'ss of exon 4
TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttttcacttgcttgctcagtgtttaatttgttttttcctttacag----------------------------------------------------------------------------------
 ||||| || ||||| || ||||| || |||||||||||||| || ||||| || || || || || || ||||| ||||| |||||||| |||||||||||  |||       |        ||||||| ||   || |   || || ||  |||   || |    ||                                                                                  
GTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAGgtaca--actaagaatatcataatgttttttcatttagctggtgcatgattgatcagttacatcataccaagcttgaatatggccagtttactgtttaagaagctccactgatattacttagtggtttactctaatgcttgcttatggttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048122|gb|EB158540.1|EB158540
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAGGGTATTTGTCCATGTTTCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|60348273|gb|DN215246.1|DN215246
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211382592|gb|FK956034.1|FK956034
EST:     AGCTGGGTATACCGACCAAAGCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|20811186|gb|BQ295664.1|BQ295664
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211385219|gb|FK956040.1|FK956040
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|148958380|gb|EC904610.2|EC904610
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211382591|gb|FK956033.1|FK956033
EST:     AGCTGGGTATACCGACCAAAGCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|31664405|gb|CD573130.1|CD573130
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|149013823|gb|EE043297.2|EE043297
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|50325946|gb|CO521072.1|CO521072
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211111338|gb|FL202663.1|FL202663
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTC
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTC
EST: gi|211385218|gb|FK956039.1|FK956039
EST:     AGCTGGGTATACCGACCAAAGCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|76015327|gb|DT942497.1|DT942497
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|149014660|gb|EE044326.2|EE044326
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|149081616|gb|EE170759.2|EE170759
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|22818902|gb|BU498992.1|BU498992
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAAGGTATTTGTCCAT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAA-GGTATTTGTCCAT
EST: gi|30705314|gb|CD058743.1|CD058743
EST:     TGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCGAGAAGGTATTTGTCCATGTTCCTTCAGAAAT
genomic: TGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTC-AGAAGGTATTTGTCCATGTTCCTTCAGAAAT
EST: gi|211382590|gb|FK956032.1|FK956032
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|101396014|gb|EB819936.1|EB819936
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTTCAGAA
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACT-CAGAA
EST: gi|67017978|gb|CO446727.1|CO446727
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|44681759|gb|CK786807.1|CK786807
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAAAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|91055801|gb|EB166219.1|EB166219
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211382594|gb|FK956036.1|FK956036
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|78081122|gb|DV509534.1|DV509534
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|26456947|gb|CA828530.1|CA828530
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|148960678|gb|EE011309.2|EE011309
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|148943844|gb|EC888923.2|EC888923
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|148935087|gb|EC879128.2|EC879128
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|149107089|gb|EE188981.2|EE188981
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|148971131|gb|EE021979.2|EE021979
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211385220|gb|FK956041.1|FK956041
EST:     AGCTGGGTATACCGACCAAAGCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211222269|gb|FL202715.1|FL202715
EST:     AGCTGGGTATACCGACCAAARCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCA
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCA
EST: gi|60350695|gb|DN217668.1|DN217668
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTC
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTC
EST: gi|211385221|gb|FK956042.1|FK956042
EST:     AGCTGGGTATACCGACCAAAGCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|89756277|gb|DY686359.1|DY686359
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCCACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTTCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|62525906|gb|DN828554.1|DN828554
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211385222|gb|FK956043.1|FK956043
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|149072304|gb|EE160567.2|EE160567
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211385224|gb|FK956045.1|FK956045
EST:     AGCTGGGTATACCGACCAAAGCGTACTATGCTGTGGAGGAGGTTAAAGAG                         AATGCGACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATT
EST: gi|211112260|gb|FL202681.1|FL202681
EST:     AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG                         AATGCAACTCAGAAAAGTCA
genomic: AGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataact ... tcctttacagAATGCAACTCAGAAAAGTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAGgtacataacttgctgagttgctggagtttttcacttgcttgctcagtgtttaatttgttttttcctttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG