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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAGgtttgccataattcacatttagattgaatggcaggtgctatactgtttatgttttcttacccttagttttgtgccattacaattcctgaagtacttgtcc...

Basic information

species Zea mays
transcript GRMZM2G060977_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060977_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 3
GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAGgtttgccataatt-cacatttagattga-atggcaggtgctatactgtttatgttttcttacccttagttttgtgccattacaattcctgaagtacttgtcc---------
||||| || ||||| |||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||    |||| || ||| ||| | | ||   || ||| ||| | ||| |||||            ||   ||||||||  |||   | || |  |||           
GTTCTTGGAATCCCATGGGATGTGGACACTGAAGGATTAAGAGAGTACATGGGCAAGTTTGGACCCCTAGATGATTGCGTCGTCATGAAGgtttgtagcaatttcatattcagaataagatattagatgccatattctttgtgttt-----------attacatgccattaagatttgaggagaatatgtttcttgtcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107954|gb|DV526372.1|DV526372
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGCGGGTTTGGCTATGTAACATTCGCCTCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAGgtttgccata ... aaaataatagGAGCGGTCTTCTGGGCGATCTCGCGGGTTTGGCTATGTAACATTCGCCTCA
EST: gi|32942400|gb|CF047219.1|CF047219
EST:     TACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGCGGGTTTGGCTATGTAGCATTCGCCTCA
genomic: TACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAGgtttgccata ... aaaataatagGAGCGGTCTTCTGGGCGATCTCGCGGGTTTGGCTATGTAACATTCGCCTCA
EST: gi|22490712|gb|BU050635.1|BU050635
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGCGGGTTTGGCTATGTAACATTCGCCTCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGACGATTGTGTCGTCATGAAGgtttgccata ... aaaataatagGAGCGGTCTTCTGGGCGATCTCGCGGGTTTGGCTATGTAACATTCGCCTCA