1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCACCAAAATGAAGAGTTTTCTGTGAGAGGGAAAGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctttattcagacttaacttgctcgggccactttaaggaaaaaagagatgtttatttataccttgaggaaagtagggtttcatgtcttataatagcataccactgggtttgagcatgcatgtcaataacacatcaatcttatcagtgcatatgattgaatttttcag
species | Zea mays |
transcript | GRMZM2G060669_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|60394770|gb|DN227640.1|DN227640
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|20802865|gb|BQ293915.1|BQ293915
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|5608402|gb|AI901979.1|AI901979
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|9733680|gb|BE512432.1|BE512432
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|26456474|gb|CA828057.1|CA828057
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|37395737|gb|CF635151.1|CF635151
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTEST: gi|44901460|gb|CK828005.1|CK828005
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
EST: TTCAGATTTACTCATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTT GTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
genomic: TTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctt ... aatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCAAAATGAAGAGTTTTCTGTGAGAGGGAAAGAACCAAAGGATGAAGTTCAGATTTACACATGGAAGGATGCCACTCTCCGTGAGCTTACTGATCTTgtaagtcctttattcagacttaacttgctcgggccactttaaggaaaaaagagatgtttatttataccttgaggaaagtagggtttcatgtcttataatagcataccactgggtttgagcatgcatgtcaataacacatcaatcttatcagtgcatatgattgaatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT