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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGACAATGACCATGGAATGAGCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagccttccacaccaacacttgaagttatccattttgctgttgtctttaatgagaaacattttccattttcctgttgtcttccatcgcactgttgatctcagtcatgacgccagtctctttgacttgcactaccaattataacatctcgtgacttattggactttttgcttgccag

Basic information

species Zea mays
transcript GRMZM2G060284_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13515926|gb|BG518202.1|BG518202
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|94479553|gb|EB708511.1|EB708511
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|149085564|gb|EE175076.2|EE175076
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTTTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|50324691|gb|CO519817.1|CO519817
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|28187707|gb|CB179317.1|CB179317
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGCGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|94479552|gb|EB708510.1|EB708510
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCCCCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|211224212|gb|FK968311.1|FK968311
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGCGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|149085565|gb|EE175077.2|EE175077
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|13490745|gb|BG517509.1|BG517509
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|76937460|gb|DV175147.1|DV175147
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: gi|211224214|gb|FK968313.1|FK968313
EST:     GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG                         GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT