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AGGAAAATGTTGAGCGTGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattccaatgccatcatggattgttaatgattttatgattcgaatagctaacactgaatatatgtgaatgttcctatgttagtggcaattatttag...
species | Zea mays |
transcript | GRMZM2G059039_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|148969036|gb|EE019749.2|EE019749
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|211444762|gb|FL341640.1|FL341640
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGNGGAGCAAGGATCAGAGATTCGTGEST: gi|71766575|gb|DR964512.1|DR964512
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|60338080|gb|DN205053.1|DN205053
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|211433492|gb|FL365020.1|FL365020
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|148943964|gb|EC889044.2|EC889044
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|211185388|gb|FL309812.1|FL309812
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTEST: gi|211314239|gb|FL336753.1|FL336753
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCT
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACGACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|76014976|gb|DT942146.1|DT942146
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|32164953|gb|CD670271.1|CD670271
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|211306674|gb|FL363564.1|FL363564
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|108824166|gb|EC278174.1|EC278174
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|31356580|gb|CD440937.1|CD440937
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|211050490|gb|FL366022.1|FL366022
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|211055963|gb|FL348933.1|FL348933
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGNGGAGCAAGGATCAGAGATTCGTGEST: gi|89761569|gb|DY689527.1|DY689527
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|149105666|gb|EE291222.2|EE291222
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|50326790|gb|CO521916.1|CO521916
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTGEST: gi|31358588|gb|CD442945.1|CD442945
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
EST: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAA ATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
genomic: TGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattcc ... tattggccagATTCATTACAACCTTTATTTAAGCATGTGGAGCAAGGATCAGAGATTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAAATGTTGAGCGTGATGCTGTTCATAAAGCGCTCATGTCCCTTATACGGCAAGATGTTAAAAgtaagattccaatgccatcatggattgttaatgattttatgattcgaatagctaacactgaatatatgtgaatgttcctatgttagtggcaattatttag
- - - - - - - - - ATGCTG
- - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG