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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACAGGGAGGATGAGTGTGGCATTTGCCTGGAGACCTGCACCAAGATGGTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctccctgtcgctcttgcttatccgtttggggggtgtattatttaagcaacaatatatctgactgagcctggatcgttatcagttagggccccga...

Basic information

species Zea mays
transcript GRMZM2G058450_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058450_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g67850.1 (Oryza sativa), 5'ss of exon 4
ATGACAGGGAGGATGAGTGTGGCATTTGCCTGGAGACCTGCACCAAGATGGTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgta--ttgctccctgtcgctcttgcttatccgtttggggggtgtattatttaagcaaca-atatatc-tgactgagcctggatcgttatcagttagggccccga----
| || ||||| |||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  ||||||||| || | |||||||||||||||| |        |||||||| |  | ||||||  |  | | ||   |||  |||||| |||  | ||| |    
ACGAGAGGGAAGATGAGTGCGGCATTTGCTTGGAGACTTGCACCAAGATGGTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgctccctctcacccttgcttatccgtttgag--------tatttaagtagtatatatatgatacccgtgcaacgatatttatcaattataggccccatgtc

upper sequence: GRMZM2G058450_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
ATGACAGGGAGGATGAGTGTGGCATTTGCCTGGAGACCTGCACCAAGATGGTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgta--ttgctccctgtcgctcttgcttatccgtt-tggggggtgtattatttaagcaacaatatatctgactgagcctggatcgttatcagttagggccccga------------------------
   | ||||| ||||| ||||| |||||  ||||| | |||||||| |||||| | || ||||||   ||||| |||||||||||||| ||||| ||||||||  ||| |  ||       |||  | | | || |   |  | ||  | ||   ||||   |||  |||  ||  || ||  | |||   |     | |                           
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttc-caactgcatacatga--gattctagactgctatttttctttacactcttcctcttctttatccaaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28931313|gb|CB334674.1|CB334674
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGA
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGA
EST: gi|211144877|gb|FL420891.1|FL420891
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|211375380|gb|FL443205.1|FL443205
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|50325950|gb|CO521076.1|CO521076
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|148930523|gb|EE285118.2|EE285118
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|71332531|gb|DR803233.1|DR803233
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|60394714|gb|DN227584.1|DN227584
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT