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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGCgtgggtgccttcacctaactactccatcttgacgtggcaatgtttatcatgattataattatgattatgattattattattattactattattattatta...

Basic information

species Zea mays
transcript GRMZM2G057963_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057963_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g32750.1 (Oryza sativa), 5'ss of exon 4
GGTGGATGGGAGGACGACGAGAGCATCGACGAAGCTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGCgtgggtgccttcacctaactactccatcttgacgtggcaatgtttatcatgattataattatgattatgattattattattattactattatta-ttatta
|||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| || | || || |||| |  | |     |    ||| |     |    |  |  |   |  || | | | | || | |  | || |     |     | |||| ||| | 
GGTGGATGGGAGGACGACGAGAGCATCGGCGAAGCTGCCTGCAGAGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCGTTCTAAGTgtaggtgacccctctctgatgtgtcatttatgtttaaataattgcaaattagttgttaat-taatcaggccttttctggaggtcgagttgattaattagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233575|gb|DT641489.1|DT641489
EST:     CTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGC                         GCGACACCGCTGGGTGAATGGATCTTCAAGAGCAAGAGCAAGCAAAATAGT
genomic: CTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGCgtgggtgcct ... tttcattcagGCGACACCGCTGGGTGAATGGATCTTCAAGAGCAAGAGCAAGCAAAATAGT
EST: gi|78075588|gb|DV504022.1|DV504022
EST:     CTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGC                         GCGACACCGCTGGGTGAATGGATCTTCAAGAGCAAGAGCAAGCAAAATAGT
genomic: CTGCCAGCAGGGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCATTATCAGCgtgggtgcct ... tttcattcagGCGACACCGCTGGGTGAATGGATCTTCAAGAGCAAGAGCAAGCAAAATAGT