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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATGGATACTGCTACTGTGAGAAACACAAATGCGAATGTGGCGGTGCCTTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaatcattacgacctgcatacaaaaacaaataacctgtggagccaattataacttctcacgtattggtgatgcag

Basic information

species Zea mays
transcript GRMZM2G057408_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076508|gb|DV504942.1|DV504942
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: gi|78118281|gb|DV536668.1|DV536668
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: gi|148956892|gb|EC902815.2|EC902815
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTNCA-GTAGCATGGAGAGTCCATCTGGT
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTT-CAAGTAGCATGGAGAGTCCATCTGGT
EST: gi|71428977|gb|DR810027.1|DR810027
EST:     TCCTGGGACAATACTCTTGGCTCA-CCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TCCTGGGACAATACTCTTG-CTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: gi|89757689|gb|DY687184.1|DY687184
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTC
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTC
EST: gi|71441161|gb|DR822211.1|DR822211
EST:     TCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTNCA-G                         GTGCAGCTGCAACAAATAACTGGTTCA-GTAGCATGGAGAGTCCATCTGG
genomic: TCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTT-CAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTG-TTCAAGTAGCATGGAGAGTCCATCTGG
EST: gi|91876492|gb|EB406449.1|EB406449
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCCACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: gi|71763063|gb|DR961000.1|DR961000
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: gi|78118283|gb|DV536669.1|DV536669
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: gi|101392321|gb|EB818090.1|EB818090
EST:     TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG                         GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA