1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTGTAAGAAACGAATCATTAGTTGATGAATTGAAAGAAGCCTTGGCTGATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatttcttatgatcctatgtatgtgaataactataggtttgctctgaaaatttctcaaatattcaacccttattag
species | Zea mays |
transcript | GRMZM2G056975_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAA GTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGTEST: gi|71445035|gb|DR826085.1|DR826085
genomic: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatt ... cccttattagGTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGT
EST: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAA GTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGTEST: gi|14206809|gb|BG840487.1|BG840487
genomic: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatt ... cccttattagGTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGT
EST: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAA GTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGTEST: gi|211496438|gb|FL049443.1|FL049443
genomic: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatt ... cccttattagGTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGT
EST: AGAAATTATTCCTGGGGAGCAAGGTGTCATAGAA GTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGTEST: gi|149066676|gb|EE286811.2|EE286811
genomic: AGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatt ... cccttattagGTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGT
EST: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAA GTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGT
genomic: ATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatt ... cccttattagGTTGCTCGCCATCCAGATGCAGTTACAGTTGTCACAGGGATAGTAGGTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGTAAGAAACGAATCATTAGTTGATGAATTGAAAGAAGCCTTGGCTGATTGCGAAGAGAAGCCAGAAATTATTCCTGGGGAGCAAGGTGTCATAGAAgtaagacatttcttatgatcctatgtatgtgaataactataggtttgctctgaaaatttctcaaatattcaacccttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG