1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAGAGTTTGTTATGACCAAAGATGAGTTCTCGGGCGCTGATATTAAGGCCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctgaacttgtatccctacatcaattcgtataaacttgtctgggtgaatagaagtattcgaataactcgaccttttatttgctatcgaataggga...
species | Zea mays |
transcript | GRMZM2G056569_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|166680104|gb|EG225400.1|EG225400
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|45568169|gb|CK985936.1|CK985936
genomic: CGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|9953765|gb|BE640348.1|BE640348
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: GTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAAC-AAGGAGAAGGTGATGTACAAGAAGEST: gi|62550417|gb|DN830837.1|DN830837
genomic: GTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAG GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|116828199|gb|EC855484.1|EC855484
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|166430147|gb|EG115061.1|EG115061
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGEST: gi|14203652|gb|BG837329.1|BG837329
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|32937106|gb|CF041925.1|CF041925
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|211285728|gb|FL480875.1|FL480875
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAA GTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctga ... ggatacccagGTGACCCATGCAGATTTCAAGAAAGCAAAGGAGAAGGTGATGTACAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAGTTTGTTATGACCAAAGATGAGTTCTCGGGCGCTGATATTAAGGCCATCTGCACGGAGGCTGGATTGCTCGCCTTAAGAGAACGTAGAATGAAAgtgagcctgaacttgtatccctacatcaattcgtataaacttgtctgggtgaatagaagtattcgaataactcgaccttttatttgctatcgaataggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatagaa