1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTACAAACGCTTGATACGCTGTATAATTTGGACTGGCTCACCAGCGCCGCTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAGgtactttaactattgctttctaaatggaaaaaagaaacagcataacatgaggagtctgtgccagtggttactagcctataaactacagttctagtgggtg...
species | Zea mays |
transcript | GRMZM2G055607_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAG GGAATTTTGGAAAACCCTGAAGATATAGTTAGTTATTTGAACEST: gi|71758717|gb|DR956654.1|DR956654
genomic: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAGgtactttaac ... ttttttccagGGAATTTTGGAAAACCCTGAAGATATAGTTAGTTATTTGAAC
EST: AGTGGATGCTTAATCAG GGAATTTTGGGAAAACCCTGAAGATTATAGTTAGTTATTTGAAACAAGAAGEST: gi|71315790|gb|DR794540.1|DR794540
genomic: AGTGGATGCTTAATCAGgtactttaac ... ttttttccagGGAATTTT-GGAAAACCCTGAAGA-TATAGTTAGTTATTTG-AACAAGAAG
EST: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAG GGAATTTTGGAAAACCCTGAAGATATAGTTAGTTATTTGAACAAGAAGGGTEST: gi|91871874|gb|EB401831.1|EB401831
genomic: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAGgtactttaac ... ttttttccagGGAATTTTGGAAAACCCTGAAGATATAGTTAGTTATTTGAACAAGAAGGGT
EST: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAG GGAATTTTGGAAAACCCTNGA-GATATAGTTAGTTATTTGAACAAGAAGGEST: gi|74241101|gb|DT649015.1|DT649015
genomic: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAGgtactttaac ... ttttttccagGGAATTTTGGAAAACCCT-GAAGATATAGTTAGTTATTTGAACAAGAAGG
EST: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAG GGAATTTTGGAAAACCCTGAAGATATAGTTAGTTATTTGAACAAGAAGGGT
genomic: CTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAGgtactttaac ... ttttttccagGGAATTTTGGAAAACCCTGAAGATATAGTTAGTTATTTGAACAAGAAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACAAACGCTTGATACGCTGTATAATTTGGACTGGCTCACCAGCGCCGCTAAGAATGAGTGCACAGCTGCATTTGGACTGAAGTGGATGCTTAATCAGgtactttaactattgctttctaaatggaaaaaagaaacagcataacatgaggagtctgtgccagtggttactagcctataaactacagttctagtgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA