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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGATGGGCCAGTAGCATCATCCCTTAATCGAACCAAGCGTTGGCTTCTCTCTCACTCCCAACATCTCAACTTCTTCTCTATCTTGATTCTTGCTTCGgttggtctcctgtcttccatcctctgttaccaagttcttcagtgtggatattttacacctgtaatttatgatatttggctttgtgtcttcacaattgatc...

Basic information

species Zea mays
transcript GRMZM2G054811_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054811_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g57066.1 (Oryza sativa), 5'ss of exon 5
AGAAGATGGGCCAGTAGCATCATCCCTTAATCGAACCAAGCGTTGGCTTCTCTCTCACTCCCAACATCTCAACTTCTTCTCTATCTTGATTCTTGCTTCGgttggtct---cctgtcttccatcctctgttaccaagttcttcagtgtggatattttacacctgtaatttatg-atatttggctttgtgtcttcacaattgatc
 ||| |||| ||| |||||||  | || |||||||| || || ||||| || || ||||| || |||||||||||| |  ||||||||||||||||||||||| ||||    |  | | ||||| | |  | |||| || ||    |  |  |   |   | || ||    |  ||||  || ||       |  |||     |
TGAACATGGTCCAATAGCATCCACTCTCAATCGAACAAAACGCTGGCTCCTTTCCCACTCTCAGCATCTCAACTTCATTACTATCTTGATTCTTGCTTCGgttagtctatgtccttttcccatcttgtcatgccaatttatttgtagcagtaaggattttcttgcaaaaactacatataaggattc----tctagcaaacatgc

upper sequence: GRMZM2G054811_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT1G05360.1 (Arabidopsis thaliana), 5'ss of exon 5
AGAAGATGGGCCAGTAGCATCATCCCTTAATCGAACCAAGCGTTGGCTTCTCTCTCACTCCCAACATCTCAACTTCTTCTCTATCTTGATTCTTGCTTCGgttggtctcctgtcttccatcctctgttaccaagttcttcagtgtggatattttacacctgt----aatttatgatatttggctttgtgtct-tcacaattgatc----------------
 ||  | ||     | ||   |  | | ||||  | |||  | ||| |  | || || || ||| |||||||||||||| | ||| ||||||||||||||||  || |    |    | ||        ||||    |   |  | ||  ||||     |||      ||   |  |  |     ||||  | | ||||||                    
CGATAACGGATTCATTGCTAAACGCGTAAATCAGATCAAAAGCTGGTTATTGTCGCATTCACAATATCTCAACTTCTTCACAATCCTGATTCTTGCTTCGgtatgttttagatgagtcgtctgaacaatccaatgcttcttgcatagactttttgtgtgtgtttaaggttccgggaaacttatgatgtgcttattacaattacgttctgccttacattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5928745|gb|AW055962.1|AW055962
EST:     TCTCTCACTCCCAACATCTCAACTTCTTCTCTATCTTGATTCTTGCTTCG                         GTTCCAAATCCACTCTTTGACCTTGCTGGTATTATGTGTGGGCAATTTGGT
genomic: TCTCTCACTCCCAACATCTCAACTTCTTCTCTATCTTGATTCTTGCTTCGgttggtctcc ... ctcttattagGTTCCAAATCCACTCTTTGACCTTGCTGGTATTATGTGTGGGCAATTTGGT