Sequence
atgc intronic sequence ATGC exonic sequenceATGGTGTAAACAATAGCTCCACCACTGAAGATGGTCAGCCAAAAATTGTTATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAGgttggcaaactcttattctcatattcacttcattttaggtgctactgcctacttattattatgaataagggttggtacctggaagatgcatatgatggtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 5'ss of exon 5
ATGGTGTAAACAATAGCTCCACCACTGAAGATGGTCAGCCAAAAATTGTTATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAGgttggcaaactcttatt-ctcatattcacttcattttaggtgctactgcctacttattattatgaa---taagggttggtacctggaagatgcatatgatggtt
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ACGGTGTAAATAATAGTTCTACCACTGAAGATGGTCAACCAAAAATAGTTATGGTTCTGGCAGCTACCAACTTTCCATGGGATATTGATGAAGCACTGAGgttgggaaaccctttccattcacatttgctttaga--aatttattgagtctactaaataattggaaatttataagataa-atcacataaattca-attatattt
upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G43840.1 (Glycine max), 5'ss of exon 5
ATGGTGTAAACAATAGCTCCACCACTGAAGATGGTCAGCCAAAAATTGTTATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAGgttggcaaactcttattctcatattcacttcattttaggtgctactgcctacttattattatgaataagggttggtacctggaagatgcatatgatggtt------------------------------
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ATGGTGTAAATAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTAGCAGCCACTAACTGTCCATGGGACATAGATGAGGCACTGAGgtctagctatcttcttttttgcatcgatccttttcttacttttg-tgaatgttgagttatatatttttgtctgaagtcctacattgtgctagtcaccactagttgattcaatttgatgtttaatgcaaag
upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0002g05260.t01 (Vitis vinifera), 5'ss of exon 5
ATGGTGTAAACAATAGCTCCACCACTGAAGATGGTCAGCCAAAAATTGTTATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAGgttgg----caa-actcttattctcatatt---cacttcattttaggtgctactgcc-tacttattattatgaataagggttggtacctggaagatgcatatgatggtt-------------------------------
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ATGGTGTAAACAACAGTTCTACAGGTGAAGATGGTAGTCGAAAAATAGTGATGGTTCTGGCAGCTACAAATTTTCCATGGGATATAGATGAAGCACTCAGgttgtatctcattattttttttttaaaattaaatatttttttttttgaatttttatcattctttgaattgttaagtagatttaat--ctaggatttttctgttctaagcagtccatttgaaagatttttatgtaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211073705|gb|FL043069.1|FL043069EST: ATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAG GCGGAGGCTGGAGAAGCGTATTTATATCCCACTTCCAGATTTCGAAAGCAG
genomic: ATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAGgttggcaaac ... aattgcccagGCGGAGGCTGGAGAAGCGTATTTATATCCCACTTCCAGATTTCGAAAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGTGTAAACAATAGCTCCACCACTGAAGATGGTCAGCCAAAAATTGTTATGGTTCTAGCTGCAACAAATTTTCCATGGGATATTGATGAGGCACTGAGgttggcaaactcttattctcatattcacttcattttaggtgctactgcctacttattattatgaataagggttggtacctggaagatgcatatgatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC