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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag

Basic information

species Zea mays
transcript GRMZM2G054715_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 5'ss of exon 4
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgc--tagttgttcatttactc-----------gagtcaatgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
| |||||||||||||| || ||||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||  | |  |  |  ||  ||||||| |  |             || |||| ||| |||  |||||| |||  | ||||| ||||  || ||                                                                        
AGAGTGAGCGCATGGTCCGCTGTTTATTTGATCTTGCAAGGTTCTATGCTCCAAGTACAATCTTCATTGATGAAATTGACTCCCTCTGCACATCTCGTGGgtatgtgaatgctatctgtccatacatgttcatcttgtttaatgtctccaaagacaatcaaagttttctcaatactttttagcataatcatgggtgcatt-----------------------------------------------------------------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G43840.1 (Glycine max), 5'ss of exon 4
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
     |||||||||||||| || || ||||||||||| || || ||||| || |||||||||||||||||||||||||| ||  ||||||   |  | |||||     ||||||  ||  |  |  |  | |      | |   |   || |    | | |   || ||||| |       ||  |  || |  |  |||                                                          
----CGAGCGCATGGTTCGGTGCTTGTTTGATCTTGCAAGAGCATATGCCCCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGTA-----Agtcaatcttcttcttaatgaaatgggaataatgtttatcaactgtcacgaaagaatgaaccatga-ttcagttgagttctttttttcaacag---------------------------------------------------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G03820.1 (Glycine max), 5'ss of exon 4
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatg--aaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
| ||||||||||||||  | ||||| ||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| ||  ||||||  ||  | ||||| |          | |   |||  | ||||   |  |||  ||    |||  | || | | ||||   ||  ||  ||     | | |||||  ||   |  |                                                       
AGAGTGAGCGCATGGTGAGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATTCTAGGGGgtaagccttcgttgttctttcagtcatccattgtatgtagtagattttgaaacatgttta-tgtttt---cccaaaatatcttcatttaattct-ttgtttataa-------------------------------------------------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G01510.1 (Glycine max), 5'ss of exon 2
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
| || ||||||||||| || || || ||||||||||| || || ||||| || |||||||||||||||||||||||||| ||  ||||||   |  | |||||     ||||||          | ||| | | |  | | || || |   ||| ||  | |     |  |  |  | | ||   |  |       | || |||| | || |||   || |    | | | | |||   ||                 
AGAGCGAGCGCATGGTCCGGTGCTTGTTTGATCTTGCAAGAGCATATGCCCCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGgta-----agtcaa----------tcttcttcttcatggggca-tgtatgcttcatct-tctcaccaagtaatattagggataatttttatcaactgtcacgaaagattgaaccctgattgt---tgagtttttttcaacag----------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G22210.1 (Glycine max), 5'ss of exon 4
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatg--aaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
| ||||||||||||||  | ||||| ||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| ||  ||||||  ||  | ||||| |          | |   ||| || ||||   |  |||  ||    |||  |  | |   ||   ||  |||| | |     | | |||||  ||                                                              
AGAGTGAGCGCATGGTGAGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATTCTAGGGGgtaagcctttgttgttctttcagtcgtccattgtatgtagtagattttgaaacatgcttatatttacccaaaataatcttcttcatttaattct-ttgttt-----------------------------------------------------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G80350.1 (Arabidopsis thaliana), 5'ss of exon 4
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatgaaaatttcttcaatattttgcaccataa-gcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
| ||||||||||||||  | ||  | |||||||| || ||||| ||||||||||| |||||||| |||||||| || |||||  | ||||  || || |||||  |       |   | ||     |||  | |||  | | ||   || | | |  |||   | |     | | |||                                                                                 
AGAGTGAGCGCATGGTCAGATGCCTGTTTGATCTGGCTAGGGCATATGCTCCAAGCACAATTTTTATTGATGAGATCGACTCTCTCTGCAATTCTCGGGGgtaaattttcctgacgatactgagatttcgat-actgaaatgaa---aagtatttgtaattggtggaggtgtgatgcag--------------------------------------------------------------------------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0002g05260.t01 (Vitis vinifera), 5'ss of exon 4
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtca---atgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
| |||||||||||||| ||||| |||||||||||||| || || |||||||||||||| ||||| ||||| || ||||| ||  | ||||   | || ||||| || |  |   |  | ||  ||  |||  |  |  |||     |||   | ||       | || |  | |     |  |||   | | | | ||   |                                                           
AGAGTGAGCGCATGGTCCGTTGCTTATTTGATCTTGCAAGAGCTTATGCTCCAAGTACTATTTTTATTGACGAGATTGATTCTCTTTGCAATGCTCGGGGgtaagtaattt---gccttctcttttgtcaggttttgaagttgtatatgctcacttggcgtccacttagttcaaagtctaataattgtttagttttctatccc----------------------------------------------------------

upper sequence: GRMZM2G054715_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ06179 (Selaginella moellendorffii), 5'ss of exon 5
AAAGTGAGCGCATGGTTCGTTGTTTATTTGATCTTGCGAGGGCCTATGCTCCAAGTACAATTTTCATTGATGAAATTGACTCCTTATGCACATCACGTGGgtatgtgaagtcaagtttgctagttgttcatttactcgagtcaatgaaaatttcttcaatattttgcaccataagcatgaatgtatcattctgctggacaagaaaaaatgtacctatatcgccagttaatgtatttgtccattttttctacatatcag
|||||||||| ||||| || || || || || ||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||   | |  | |  || |||||    ||  | |  | ||| |    |  |      |  |  |     | | | ||| |                                                                                          
AAAGTGAGCGAATGGTCCGCTGCTTGTTCGACCTTGCCAGGGCCTATGCTCCGAGCACGATTTTCATTGATGAAATCGACTCCCTGTGCA--ACGCCCGAGGgtgagaagtt--tttatccatcttttcttcccgttaatcttgcgtgatatatgctattgtgttgtag-----------------------------------------------------------------------------------------