Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGCCGGCCGAGCTCGAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaatatcctctgcttcggaaccgccaaacgccgcaacaaaactgctcgttctgagtgtgtgtgtgtgtatatgtatgcgcgtggcag

Basic information

species Zea mays
transcript GRMZM2G054013_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054013_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g46970.1 (Oryza sativa), 5'ss of exon 4
GTGCCGCCGGCCGAGCTCGAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaatatcctctgcttcggaaccgccaaacgc-cgcaacaaaactgctcgttctgagtgtgtgtgtgtgtatatgtatgcgcgtggcag
||||||||||||||||| ||| | |||||| |||| |||||||||||||| ||||| |||||||||||||||||||   ||  | |       ||| ||  ||| | | | || | | |   |   | |||          |   |   | |     || |||
GTGCCGCCGGCCGAGCTGGAGTCGCTGCTCATCGCTCACCCGTCCATCGCTGACGCCGCCGTCGTCCCgtaagacctccattatttcaccatcaacagcgtaacacacaccaccagaatttactcgccgaggtaaaaaaaataactgcatgttaaaatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105640|gb|EE291190.2|EE291190
EST:     GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
EST: gi|71327258|gb|DR800256.1|DR800256
EST:     GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCC                         GCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC
genomic: GAGGCTCTGCTCGTCGCCCACCCGTCCATCGCCGACGCGGCCGTCGTCCCgtaagaccaa ... cgcgtggcagGCAAAAGGACGAAGCCGCCGGCGAGGTCCCCGTCGCCTTCGTGGTCCGCGC