Sequence
atgc intronic sequence ATGC exonic sequenceACTACTAGGCTCAATATTGTCAAATATGCTGCTGGTTCTTGGGTGTGCTTTCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAGgtagtctatttaacaaatctggttttcctgaacattttttattaaagaattactgcagtttctattgcatctatcattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G053004_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g27960.1 (Oryza sativa), 5'ss of exon 4
ACTACTAGGCTCAATATTGTCAAATATGCTGCTGGTTCTTGGGTGTGCTTTCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAGgtagtctatttaacaaatc--tggttttcctgaacattttttattaaagaatt---------actgcagtttctat-tgcatctatcattgcag
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GCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGgtagctttatgtacaatacagtagttctccttattatatttcccttacaattctcatatgtagcctcagttttgacatacatttatggatgcag
upper sequence: GRMZM2G053004_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G00380.2 (Glycine max), 5'ss of exon 4
ACTACTAGGCTCAATATTGTCAAATATGCTGCTGGTTCTTGGGTGTGCTTTCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAGgta-gtctatttaacaaatctggttttcctgaacattttttattaaagaattactgcagtttctattgcatctatcattgcag
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CCTACTCGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGCTGTGCATTCTTTACTGGTGGCCTTGCCCACTACAAAAAAGTACAGGTTTTTGATAAGgtacgtatcatcatcacctcattcgttattgctgcctccttatgtcacagagacttcacattgtactccgcct-ttgcaacag
upper sequence: GRMZM2G053004_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G44960.1 (Glycine max), 5'ss of exon 4
ACTACTAGGCTCAATATTGTCAAATATGCTGCTGGTTCTTGGGTGTGCTTTCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAGgtagtctatttaacaaatctggtt-ttcctgaacattttttattaaagaattactgcagtttctattgcatctatcattgcag
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TTTACTCGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGCTGTGCATTCTTTACTGGTGGCATTGTCCACTACAAAAAAGTGCAGGTTTTTGATAAGgta---catatcatcaccccattcatttctgcttcctcctgatgtcacag--acttcacattgtagtccgcct-ttgcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76937004|gb|DV174997.1|DV174997EST: TCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAG GCATCAGCTTGT-GTAAACTCAGGACTACTGTTG
genomic: TCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAGgtagtctatt ... atcattgcagGCATCAGCT-GTTGTAAACTCAGGACTACTGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTACTAGGCTCAATATTGTCAAATATGCTGCTGGTTCTTGGGTGTGCTTTCTTTGCTGGTGGTCTTGTCCATTCTGACAGGGACCAGGTCTTCAACAAGgtagtctatttaacaaatctggttttcctgaacattttttattaaagaattactgcagtttctattgcatctatcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG