1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAACGGTCTTCTGGGTTGGAGAATGGTTTATAAAGAAAATGCCCTTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaattagtacacaactccattctacgtgcaccagaatgttgaacgtccatattatttcttcaaaatttattttagctttcctgtagaggagtcc...
species | Zea mays |
transcript | GRMZM2G052855_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|88752753|gb|DY536894.1|DY536894
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: CATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCTCCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|60397295|gb|DN230111.1|DN230111
genomic: CATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|148995086|gb|EE034390.2|EE034390
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTTTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|71319563|gb|DR796526.1|DR796526
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|148985826|gb|EE029793.2|EE029793
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|14245263|gb|BG873845.1|BG873845
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: CATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|91049872|gb|EB160290.1|EB160290
genomic: CATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|78109866|gb|DV528282.1|DV528282
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTGEST: gi|89249400|gb|DY621186.1|DY621186
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
EST: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
genomic: AAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaat ... ctctggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATCATTAGTCATCCCCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACGGTCTTCTGGGTTGGAGAATGGTTTATAAAGAAAATGCCCTTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGCACTGCTGTTTCACCAGgtaatgtaattagtacacaactccattctacgtgcaccagaatgttgaacgtccatattatttcttcaaaatttattttagctttcctgtagaggagtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT