1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttcatctacaataaaagaacctcgtttctatgttatgttataaatttgatgctagttatgaaatgcaaaacccatgtgttcggcaagagcgat...
species | Zea mays |
transcript | GRMZM2G052479_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGEST: gi|149098517|gb|EE184497.2|EE184497
genomic: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
EST: TTAATTGGACCAGGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGEST: gi|93012301|gb|EB637821.1|EB637821
genomic: TTAATTGGACCAGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
EST: AAGCTGCTGGAGTTGCTCTTGTTTTTATTGGACCAGGTAGTGTTGAACAG GCAAAGGCATTTTTGTGAGCAAAEST: gi|211321654|gb|FL407918.1|FL407918
genomic: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTT-GTGAGCAAA
EST: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGEST: gi|211373863|gb|FL386282.1|FL386282
genomic: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
EST: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGEST: gi|148938520|gb|EC882841.2|EC882841
genomic: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
EST: GGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGEST: gi|101386886|gb|EB815460.1|EB815460
genomic: GGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
EST: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAGEST: gi|71760018|gb|DR957955.1|DR957955
genomic: AAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
EST: AGGTAGTGTTGAACAG GCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
genomic: AGGTAGTGTTGAACAGgtatgttttc ... cttgatccagGCAAAGGCATTTTGTGAGCAAACCAAATTCAAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGACATGCAAGCTGCTGGAGTTGCTCTTGTTTTAATTGGACCAGGTAGTGTTGAACAGgtatgttttcatctacaataaaagaacctcgtttctatgttatgttataaatttgatgctagttatgaaatgcaaaacccatgtgttcggcaagagcgat
- - - - - AAGCTG
- - - - - AGCTGC
- - - - - - GCTGCT
- - - - - - - GCTGGA