1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgctttttaggacaaggaatcctgttgaatatgaagttatcactctgtatgatagtatgattttcattttctgtcag
species | Zea mays |
transcript | GRMZM2G052403_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGCTGGTGAAGAAGGTGAGAGGCTAGCTATGACCGAGTTAATAGAG GGCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGGGGTACTTAAGGATEST: gi|211048842|gb|FL187602.1|FL187602
genomic: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgc ... tttctgtcagGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGAT
EST: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG GTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGATEST: gi|211048840|gb|FL187600.1|FL187600
genomic: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgc ... tttctgtcagGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGAT
EST: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG GTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGATEST: gi|211048843|gb|FL187603.1|FL187603
genomic: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgc ... tttctgtcagGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGAT
EST: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG GTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGATEST: gi|211051789|gb|FL187607.1|FL187607
genomic: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgc ... tttctgtcagGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGAT
EST: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG GTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGATEST: gi|211048844|gb|FL187604.1|FL187604
genomic: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgc ... tttctgtcagGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGAT
EST: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAG GTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGA
genomic: TTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgc ... tttctgtcagGTCATTTCAGAAGAGAACAAATCTGGACCTCTGATTGTGTTACTTAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAATCACTTCGCCCAGACTTTTCTGCTGGTGAAGAAGTTGAGAGGCTAGCTATGACCGAGTTAATAGAGgtactgctgctttttaggacaaggaatcctgttgaatatgaagttatcactctgtatgatagtatgattttcattttctgtcag
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - GAGAGG