1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCATCCCACGGAGAAAAGGGACCTCTATGATGCTGACCACGGGAAGAAGGTTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatccttcctgaccagatctcttccttccatgcacatccagtgagtaaaagaacgtattgcaatcagcatttttcttcacatctatacacatgtcaatctttgatgttttttagttatcaagaaaatagaaagatttattgtttgtctgttttcttgacatttttcttgtctgttattccggatcag
species | Zea mays |
transcript | GRMZM2G051270_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTATGAGCATGGCTCCTGGCCTCGAGAGGCTCATCATCCTTACTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|32840548|gb|CD980229.1|CD980229
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|32840519|gb|CD980200.1|CD980200
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|32830689|gb|CD970367.1|CD970367
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCEST: gi|32836595|gb|CD976273.1|CD976273
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGC
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|111191745|gb|EE289881.1|EE289881
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGTTGCATATGACACAAAGCAAAAGAAAATGGATTTTTTCGATCCATCAEST: gi|110219906|gb|EC901804.1|EC901804
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|12046747|gb|BF728886.1|BF728886
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|110961857|gb|EE181909.1|EE181909
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCGGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|148943164|gb|EC888223.2|EC888223
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTTTTCGATCCATCAEST: gi|149102605|gb|EE287963.2|EE287963
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: AGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|149076868|gb|EE165524.2|EE165524
genomic: AGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCGGCATATGACACAAAGCAAAAGAAAATGGATTTTTTCGATCCATCAEST: gi|76921061|gb|DV168441.1|DV168441
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|32926464|gb|CF031276.1|CF031276
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|32924998|gb|CF029810.1|CF029810
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|32842063|gb|CD981744.1|CD981744
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCAEST: gi|110533959|gb|EE038139.1|EE038139
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTTTTCGATCCATCAEST: gi|111190608|gb|EE288744.1|EE288744
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
EST: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAG GTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTTTTCGATCCATCA
genomic: TTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatc ... tccggatcagGTGGCTGCATATGACACAAAGCAAAAGAAAATGGATTTCTTCGATCCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCCCACGGAGAAAAGGGACCTCTATGATGCTGACCACGGGAAGAAGGTTTTGAGCATGGCTCCTGGCCTCGAGAGGCTCAACATCCTTCCTTTCAAGgtatgccatccttcctgaccagatctcttccttccatgcacatccagtgagtaaaagaacgtattgcaatcagcatttttcttcacatctatacacatgtcaatctttgatgttttttagttatcaagaaaatagaaagatttattgtttgtctgttttcttgacatttttcttgtctgttattccggatcag
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