Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAAGCTCCCGCGCCACTACCTCGTTGCTCCCCCGGAGATCCAGAGGACGTCCGGCGAGTACTTGGCGCGCAACGGCGTCCGCACCTACGCTTGCAGgtaaaaattgctgcgcttttatgttgatagattgtcttgtgacgatcgagtcgtttgattgctgtgaatcgaggcctcaaatgttgtcttcttctcgtatgaactgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G050077_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050077_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g21260.1 (Oryza sativa), 5'ss of exon 5
AGCTCAAGCTCCCGCGCCACTACCTCGTTGCTCCCCCGGAGATCCAGAGGACGTCCGGCGAGTACTTGGCGCGCAACGGCGTCCGCACCTACGCTTGCAGgtaaaaattgctgcgcttttatgttgatagattgtcttgtgacgatcgagtcgtttgattgctgtgaatcgaggcctcaaatgttgtcttcttctcgtatgaactgcgtgcag
|||| || || ||| |||| |  || ||||||||||| |||||  |||| ||||| ||||| ||||| |||||||| ||| | ||||| || ||||||||||| ||     | |  | |  ||| || ||  ||| |||    ||  |      ||| |   || | || |  || ||| || ||||| |  |    |               
AGCTAAAACTTCCGAGCCATTTTCTTGTTGCTCCCCCAGAGATAGAGAGAACGTCTGGCGAATACTTAGCGCGCAATGGCATACGCACATATGCTTGCAGgtacaatactgttcattatcttgtcgaaag--tgt-ttgctctgagtg------ttggtacttgagcat-gcagcttcatatcttgtcattctaattttcag-----------