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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAATGTTCCACTCTCGCTGGCATTGAGCCCCAGAATATTTTCTGAGGTGAATAAATTCAAGCCGGACATAATCCATGCCACCTCACCTGGAATTATGgtaatcattgcatgcccaagccccaaagtactgtgctccttccaatgttttcaccttgcttatcactttatgtgattacag

Basic information

species Zea mays
transcript GRMZM2G049190_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049190_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 5'ss of exon 4
CCAAAATGTTCCACTCTCGCTGGCATTGAGCCCCAGAATATTTTCTGAGGTGAATAAATTCAAGCCGGACATAATCCATGCCACCTCACCTGGAATTATGgtaatcattgcatgcccaagccccaaagtactgtgctccttccaatgttttcaccttgcttatcactttatgtgattacag
|||||||||||||||||||||||| |||||||| || |||||||| | ||||  |||||| |||||||||||||||||||| || ||||||||| ||||||||||||||  |  |||||      | |||   |  ||||| |  | |||  |  || || |  |  |  ||||||| |||
CCAAAATGTTCCACTCTCGCTGGCGTTGAGCCCTAGGATATTTTCGGCGGTGGCTAAATTTAAGCCGGACATAATCCATGCTACTTCACCTGGAGTTATGgtaatcattaaaaacccaat-----aggtatcattgtcctttc--tttttgtagttt-ctcactatatattgtgatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71300882|gb|DR786472.1|DR786472
EST:     TGAATAAATTCAAGCCGGACATAATCCATGCCACCTCACCTGGAATTATG                         GTTCTCGGCGCTCTGGCTATATCAAAGATGATATCAGTTCCAATGGTGATG
genomic: TGAATAAATTCAAGCCGGACATAATCCATGCCACCTCACCTGGAATTATGgtaatcattg ... gtgattacagGTTCTCGGCGCTCTGGCTATATCAAAGATGATATCAGTTCCAATGGTGATG