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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCGCAAGGACACACTGACTGAGGACGAATCTAAGTTTTATGTTGCAGAGACAATACTAGCAATTGAATCTATTCACAAACGCATTTATATTCATAGgtaacgttcaataataagcaccactatatatctaatcgcagttatttaattcagtcattcttatacctttccag

Basic information

species Zea mays
transcript GRMZM2G049088_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 5'ss of exon 4
TCATGCGCAAGGACACACTGACTGAGGACGAATCTAAGTTTTATGTTGCAGAGACAATACTAGCAATTGAATCTATTCACAAACGCATTTATATTCATAGgtaacgt-tcaataataagcaccactatatatctaatcgcagttatttaattcagtcattcttatacctttccag
| ||||||||||| ||||| || || || |||||||  ||||||||||| |||||||| |||||||||||||| || ||||| | || ||||||||||||||||    |  |||||||  |   |     ||    | |||  | |   | ||  || ||  ||||| ||| |||
TAATGCGCAAGGATACACTTACAGATGATGAATCTAGATTTTATGTTGCGGAGACAATTCTAGCAATTGAATCCATACACAAGCACAATTATATTCATAGgtaattcattgataataaaaattgcatggcattcggtagcaaatttgccactccatctttgctatacattttcag