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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCCATGGAGCTGACAATGATATTCTTTGGCTTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAGgtaagtactggtataatatatccttgttcacacatttaatctactctacaaatctggtaatgtaacatatttaaaatcattcgcttgctagacgtttttt...

Basic information

species Zea mays
transcript GRMZM2G048819_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048819_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g32890.1 (Oryza sativa), 5'ss of exon 4
ATCTTCCATGGAGCTGACAATGATATTCTTTGGCTTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAGgtaagtactggtataatata----tccttgttcacacatttaat-ctactctacaaatctggtaatgtaacatatttaaaatcattcgcttgctagacgtttttt
|||||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||| |   || | |||     || | | | | |||| |||| | | ||  || |  |  |  |  | |||       | | |  || || |    ||     
ATCTTCCATGGAGCTGACAATGATGTTCTTTGGCTTCAGAGAGACTTTCATATTTATGTTGTGAATATGTTTGATACTGCCAAGgtaagtccccctacagtatgcatgtcttggatgaaacatctaataccattccgcagagat--ttctccagcatgcgagcgaac-tgtgcctgttttttgtcgc--

upper sequence: GRMZM2G048819_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G32415.1 (Arabidopsis thaliana), 5'ss of exon 4
ATCTTCCATGGAGCTGACAATGATATTCTTTGGCTTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAGgtaagtactggtataatatatccttgttcacacatttaatctactctacaaatctggtaatgtaacatatttaaaatcattcgcttgctagacgtttttt--------
 | || || || |||||||| ||| || | ||||||||||| || || ||||| |||||||| ||||||||||||||||| ||||||   | |  | |     |||||  |  | | ||||||    || |   |||  |  |   ||  | | ||    |  |  |||  ||   |  |||||        
GTGTTTCACGGGGCTGACAACGATGTTATCTGGCTTCAAAGAGACTTCCATATATATGTTGTTAATATGTTTGATACTGCCAAGgtatacatttctct-----atcctgctctaaatatttaa---gcttttggaatgagtcagcatagaagaatttgtgtgttctgctaactctgccgtttttagaaaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075397|gb|DV503831.1|DV503831
EST:     TTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAG                         GCATGTGAAATTCTATTGAAACCACAAAAATCACTG
genomic: TTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAGgtaagtactg ... ttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTG
EST: gi|211165060|gb|FL318150.1|FL318150
EST:     AATATGTTTGATACTGCTAAG                         GCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAA
genomic: AATATGTTTGATACTGCTAAGgtaagtactg ... ttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAA