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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaacttgtactatcaatgtatgtgcttttactagattgtttgctgccgtttgtcatattttggttgaatccaaactcatccattacttgagccc...

Basic information

species Zea mays
transcript GRMZM2G048703_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048703_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G27010.1 (Glycine max), 5'ss of exon 4
GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaa----cttgtactatcaatgtatgtgcttttactagattgtttgctgccgtttgtcatattttggttgaatccaaactcatccattacttgagccc
||  |||| |||   |||||||| || ||||| ||  ||||||||||||  || |||||||| |||||||||||  ||||||||| |     ||  |     | | | |    | || || |||    ||     || || |||  ||  |   |||   ||| |    |||  ||||    
GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCAGGTCGTTTTTGGGAGGACCTGgtaagtgcaaatattttcatctgtagtattttgtatattccttgataaaatgtatgggtatggcatgattatggaaaatattaacactctaatttattga----

upper sequence: GRMZM2G048703_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 4
GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaa--cttgtactatcaatgtatgtgcttttactagattgtttgctgccgtttgtcatattttggttgaatccaaactcatccattacttgagccc
||| |||| ||    |||||||| ||||||||||||||||||||||| |  || |||||||| || ||||| ||| |||| ||  ||   |   | |||||     |||   |   ||| | |  |        ||||  ||  |||      ||    |  |||  || | ||||||  
GATTCTGCTAATTGCAATGGTGGTAAGTGGATAATTAGATTCAAAAAAGTCGTGTCAGGTCGCTTCTGGGAAGATCTGgtgaggaaaaattctaaatatcatgtcctgttgatagtctacagtagtcatgcaattttgatattctttttcaatattttgagccatttatgatttgagc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211257254|gb|FK964960.1|FK964960
EST:     GATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGGTCTGTGG
genomic: GATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGG-AGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATG-TCTGTGG
EST: gi|211118686|gb|FK964926.1|FK964926
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|89760551|gb|DY688915.1|DY688915
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|16917882|gb|BM073472.1|BM073472
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTTGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211119484|gb|FK964938.1|FK964938
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|148936054|gb|EC880114.2|EC880114
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|87153049|gb|DY397838.1|DY397838
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|6445424|gb|AW179492.1|AW179492
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211119483|gb|FK964937.1|FK964937
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGC
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGC
EST: gi|18180251|gb|BM381461.1|BM381461
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211257255|gb|FK964961.1|FK964961
EST:     GGATAATTAGATTCAAAAAGGCWGTTTCAGGTCGATTCTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAATCTTGAGTATAGCGATGA
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAA-CTTGAGTATAGCGATGA
EST: gi|74232667|gb|DT640581.1|DT640581
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|28361610|gb|CB239966.1|CB239966
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGG
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|93012199|gb|EB637719.1|EB637719
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211254818|gb|FK964953.1|FK964953
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|31612425|gb|CD569047.1|CD569047
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|71327672|gb|DR800450.1|DR800450
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|91053786|gb|EB164204.1|EB164204
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|14245305|gb|BG873887.1|BG873887
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|74232666|gb|DT640580.1|DT640580
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|19058335|gb|BM737002.1|BM737002
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|60351308|gb|DN218281.1|DN218281
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|5499467|gb|AI855334.1|AI855334
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211119488|gb|FK964942.1|FK964942
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGT
EST: gi|78088649|gb|DV517042.1|DV517042
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211254822|gb|FK964957.1|FK964957
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|78088650|gb|DV517043.1|DV517043
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211119477|gb|FK964931.1|FK964931
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|31349975|gb|CD434332.1|CD434332
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|28361792|gb|CB240148.1|CB240148
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|15199121|gb|BI423668.1|BI423668
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|149070116|gb|EE158515.2|EE158515
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211118676|gb|FK964916.1|FK964916
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATG
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATG
EST: gi|89760553|gb|DY688916.1|DY688916
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|149005273|gb|EE039821.2|EE039821
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211257252|gb|FK964958.1|FK964958
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCA
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCA
EST: gi|211118681|gb|FK964921.1|FK964921
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGAC-AACTTGAGTATAGCGATGAWGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|8368073|gb|BE051018.1|BE051018
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCT
EST: gi|31612426|gb|CD569048.1|CD569048
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|32834070|gb|CD973748.1|CD973748
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
EST: gi|211118685|gb|FK964925.1|FK964925
EST:     AGTAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTCTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAGCTTGAGTATAGCGAT
genomic: A-TAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTT-TGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGAT
EST: gi|22490736|gb|BU050659.1|BU050659
EST:     GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTG                         GTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT
genomic: GGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaac ... tgatctccagGTGCTAGTGGTAGTAGGCGACCAACTTGAGTATAGCGATGATGTCTGTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCCTGCAAACCAGAATGGTGGCAAGTGGATAATTAGATTCAAAAAGGCAGTTTCAGGTCGATTTTGGGAGGATTTGgtaagtgaacttgtactatcaatgtatgtgcttttactagattgtttgctgccgtttgtcatattttggttgaatccaaactcatccattacttgagccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT