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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCGCAAATATGCCAGATCAGAGAGAGTTCTTTTCCATTATAATGGCCATGGCGTACCAAAGCCTACATCTAATGGTGAGATTTGGGTGTTTAACAAGgtaaaattatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttcttgcag

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 4
TTGCCGCAAATATGCCAGATCAGAGAGAGTTCTTTTCCATTATAATGGCCATGGCGTACCAAAGCCTACATCTAATGGTGAGATTTGGGTGTTTAACAAGgtaaaattatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttcttgcag
|||||| |||| ||| ||| |||||||||| ||||| ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||  | |    ||| ||||| ||    ||||  ||||   |||     |||  |||| | |||  || |       |  ||||||| | ||||  |||||
TTGCCGTAAATTTGCTAGAACAGAGAGAGTCCTTTTTCATTACAATGGTCATGGTGTACCAAAGCCTACAGCTAATGGGGAGATTTGGGTATTTAACAAGgtgaa--tgttgcaaaggcactgcataagctgct--gcattgtttatc---catgtgtgtttttgacgaagtg---cccttttttttttactttttggtgcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 3
TTGCCGCAAATATGCCAGATCAGAGAGAGTTCTTTTCCATTATAATGGCCATGGCGTACCAAAGCCTACATCTAATGGTGAGATTTGGGTGTTTAACAAGgtaaaattatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttcttgcag
|||||| |||| ||| ||| |||||||||| ||||| ||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||  | |    ||||||||| ||    ||||  ||||   |||     |||  |||| | |||  || |      | | ||||||| | ||||  |||||
TTGCCGTAAATTTGCTAGAACAGAGAGAGTCCTTTTTCATTACAATGGTCATGGTGTACCAAAGCCTACAGCTAATGGGGAGATTTGGGTATTTAACAAGgtgaa--tgttgcaaagacactgcataagctgct--gcattgtttatc---catgtgtgtttttgacgaagt------gccctttttttac-tttttgtgcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGCCGCAAATATGCCAGATCAGAGAGAGTTCTTTTCCATTATAATGGCCATGGCGTACCAAAGCCTACATCTAATGGTGAGATTTGGGTGTTTAACAAGgtaaaattatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttcttgcag
||| || |||||||| |   | ||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||||||| |||||||| |||||||||||    || | |  |      | | ||   | |  ||      || ||| || |        ||| ||     |  || | | || | ||    ||   ||||
TTGTCGGAAATATGCAAAGACCGAGAGAGTTCTATTCCATTATAATGGGCATGGTGTGCCAAAACCTACAGCTAATGGTGAAATTTGGGTATTTAACAAGgtctgttttttactagcgttttcttttctctaccatgttcttgttccttctcgt--------ctgttaccacgagctgattgattctctg----tttgagcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
TTGCCGCAAATATGCCAGATCAGAGAGAGTTCTTTTCCATTATAATGGCCATGGCGTACCAAAGCCTACATCTAATGGTGAGATTTGGGTGTTTAACAAGgtaaa--attatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttcttgcag
 || || ||||||||||  || ||||||||| | || || |||||||| ||||| ||||||||||| ||  |||||||||| |||||| | || || ||||||    ||||   |||||   |||   ||||   |||       |  | |    ||| | | |||  ||  ||   |  |  || ||  || |           
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgtattttattactttgaagtt-ctgccgtgct-attttattgatatcgcct---ttagatttttctccta--ttctgactggtgtattggtgaag----------