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GATTGCAAGCCAACAGAGAAAGGTGGAATGTACTATGAGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaactcccttctgtattcttaatcctttgatagaatatggtacatggtaattatgagttcaggtattatagagcgcaccaatttccttgacatt...
species | Zea mays |
transcript | GRMZM2G048045_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|88756008|gb|DY540149.1|DY540149
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|78103766|gb|DV522194.1|DV522194
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|211456722|gb|FL410364.1|FL410364
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|211509379|gb|FL412049.1|FL412049
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|33101585|gb|CF061545.1|CF061545
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|148942098|gb|EC887100.2|EC887100
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|211109347|gb|FL402577.1|FL402577
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|211447310|gb|FL370711.1|FL370711
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTAEST: gi|71332422|gb|DR803167.1|DR803167
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|211169918|gb|FL423118.1|FL423118
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|13126325|gb|BG316895.1|BG316895
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|7137774|gb|AW499263.1|AW499263
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: GTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGTCTACGTCCAAGCATGACATCTACCTAGTATCAEST: gi|211536231|gb|FL396284.1|FL396284
genomic: GTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
EST: GTTCAGACGAAATACTCCGATCGATTAAGTCAACTATTCTACATTT-CAG CTTCGAAAATTTGGGNATGGGCTACGTCCAAGCATGACATCTACCTAGTA-EST: gi|9952999|gb|BE639582.1|BE639582
genomic: GTTCAGACGAAATACTC-GATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAA-TTTGGT-ATGGGCTACGTCCAAGCATGACATCTACCTAGTAT
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACAEST: gi|71320210|gb|DR796860.1|DR796860
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACA
EST: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAG CTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
genomic: AGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaac ... gtgcctgcagCTTCGAAATTTGGTATGGGCTACGTCCAAGCATGACATCTACCTAGTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGCAAGCCAACAGAGAAAGGTGGAATGTACTATGAGTTCAGACGAAATACTCGATCGATTAAGTCAACTATTCTACATTTTCAGgtgagttaactcccttctgtattcttaatcctttgatagaatatggtacatggtaattatgagttcaggtattatagagcgcaccaatttccttgacatt
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