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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAgtaagtgctttgtcatgcatgtatctgaataaggcaaccaaaagacattggcttaatattcagaaaaggccaacaacctttgtgtagtgattatgcacat...

Basic information

species Zea mays
transcript GRMZM2G047894_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047894_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 4
AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAgtaagtgctttgtcatgcatgtatctgaataaggcaaccaaaagacattggcttaatattcagaaaaggccaacaacctttgt--gtagtgattatgcacat--------------------
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AAAAGGGATGAGGCATATTTCATGTCTCTCCTGAAAATCGCAGAAACTACTCATGGGCTTTATTACTCTTATGACAGGGATTTGACACTGAAgtaagtatcaagttatgcatgactgtggataggtcaactaaaatat-----ctatctgttcacatccttgcaataaactttgtcactagttattttctgtcttatgagttattacttcgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211223965|gb|FL409228.1|FL409228
EST:     GAAACTACTTGTGGATTGTATTATTCATACGACAGGGATTTGACACTAAA                         CTTGCAGAGGGCATCCAAG
genomic: GAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAgtaagtgctt ... gattatgtagCTTGCAGAGGGCATCCAAG
EST: gi|211348875|gb|FL413241.1|FL413241
EST:     GAAACTACTTGTGGATTGTATTATTCATACGACAGGGATTTGACACTAGA                         CTTGCAGAGGGCATCCCAGTTGGCTGCAGGGAGGGTACATAGACCACTATG
genomic: GAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAgtaagtgctt ... gattatgtagCTTGCAGAGGGCATCCAAGTTGGCTGCTGGGAGGGTACATAAACCACTATG
EST: gi|78086850|gb|DV515243.1|DV515243
EST:     GAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAA                         CTTGCAGAGGGCATCCAAGTTGGCTGCTGGGAGGGTACATAAACCACTATG
genomic: GAAACTACTTGTGGATTGTATTATTCATATGACAGGGATTTGACACTAAAgtaagtgctt ... gattatgtagCTTGCAGAGGGCATCCAAGTTGGCTGCTGGGAGGGTACATAAACCACTATG