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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATATTCTTTCAACAAAGGCATGGTCCAGGCCAAAGATCATTGTATAACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttgagttcggtgacctattttttcagatagaaagatctctctggaataatattctattgtttacacaattcattttgcag

Basic information

species Zea mays
transcript GRMZM2G047223_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g31840.2 (Oryza sativa), 5'ss of exon 4
TCATATATTCTTTCAACAAAGGCATGGTCCAGGCCAAAGATCATTGTATAACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttgagttcggtgacctattttttcagatagaaagatctctctggaataatattc--tattgtttacacaattcattttgcag
 ||||| ||||| ||||| || |||||||||||||||||||| ||||||||  || | |||||||| ||||| ||||| |||||||||||||| |||||||||||| || |    | ||||   ||||   | ||| |   || ||| | || ||||||    | |  ||| || ||| |||  |||||
ACATATTTTCTTCCAACAGAGACATGGTCCAGGCCAAAGATCCTTGTATAATGTTCTAAAAGCATACTCTGTTTATGATAGGGATGTTGGATACGTGCAGgtttgtgttaaaactgctgactagttttaggatataaacttat-tctgttgagtaatatgtgttctcttttgcataat-catgatgcag

upper sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G15930.1 (Arabidopsis thaliana), 5'ss of exon 4
TCATATATTCTTTCAACAAAGGCATGGTCCAGGCCAAAGATCATTGTATAACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttgagttcggtgacctattttttcagatagaaagatctctctggaataatattctattgtttacacaattcattttgcag
 ||| | ||||| ||  | || ||||| ||||||||||||||||| || ||  || | |||||||| |||||||||||||| ||||| |||||||| ||||| | |   ||| ||  |  | |  || ||        |||||    ||  ||| |      | |  |   || |   ||  |||||
ACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATCATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGgtatttccagagatcttttcctttattcttatttgcccaagatggtact--aattacgaaagactcatggtactaaaaataatgcag

upper sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0083g00540.t01 (Vitis vinifera), 5'ss of exon 4
TCATATATTCTTTCAACAAAGGCATGGTCCAGGCCAAAGATCATTGTATAACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttg----ttttgagttcggtgacctattttttca--gatagaaagatctctctggaataatattctattgtttacacaattcattttgcag
 ||| | ||||| || || || ||||| || || ||||| ||  | || ||  ||||||| ||||| ||||| |||||||| |||||||||||||| ||||||||    |  ||  |    | ||   | | || |  | | | | |||       |||| | |||  ||||     |   ||     |||||
ACATGTTTTCTTCCAGCAGAGACATGGACCTGGTCAAAGGTCCCTCTACAATGTTTTGAAGGCATACTCTGTGTATGACAGAGATGTTGGATATGTTCAGgtttggatctcatgtatctcatcactcttctatttactgtttgtaggatact----gaatgacattggattg---gtatcgtttgaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78113905|gb|DV532294.1|DV532294
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGTTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|89247292|gb|DY619078.1|DY619078
EST:     ACATTTTGAAAGCATATTCTGTTTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGTTGCTGC-TCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|211004390|gb|FL335892.1|FL335892
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTT-AGCT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCT
EST: gi|61118400|gb|DN559361.1|DN559361
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|78118514|gb|DV536898.1|DV536898
EST:     TTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: TTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|89758012|gb|DY687355.1|DY687355
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGTTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|91874336|gb|EB404293.1|EB404293
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|78117555|gb|DV535942.1|DV535942
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|71771758|gb|DR969695.1|DR969695
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGGTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
EST: gi|78118515|gb|DV536899.1|DV536899
EST:     ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAG                         GGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT
genomic: ACATTTTGAAAGCATATTCTGTCTATGACAGGGATGTTGGATATGTGCAGgtttgttttg ... cattttgcagGGAATGGGATTTTTAGCTGGGCTGCTGCTTCTTTATATGAGTGAGGAGGAT