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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccgcaaccggcatccagtcgcttcctgtattttcgccttccttttggaaaccggcgctgcaaagtctgcaactgcaaccgtggctgactctggtctcctctcctcccgaactggtcag

Basic information

species Zea mays
transcript GRMZM2G047143_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047143_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 3
ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccgcaaccggcatccagtcgcttcctgtattttcgccttccttttggaaaccggcgctgcaaagtctgcaactgcaaccgtggctgactctggtctcctctcctcccgaactggtcag----
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||   |||  || |    |   | | || ||      |             |  | |  |||   || | |   || |||     | |  | |  |  |    |     | || |       
ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagcgccattaccaccacctctacttcttcagtgttcagtgttcatcgcctctgctctcccccccaattcctcccagctcatccgcattcgtcgattgattgattgattgattgattgattttgcag

upper sequence: GRMZM2G047143_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT3G25980.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccgcaaccggcatccagtcgcttcctgtattttcgccttccttttggaaaccggcgctgcaaagtctgcaactgcaaccgtggctgactctggtctcctctcctcccgaactggtcag
   | ||||||||| || |||||||||||||||||||| || || || ||| | ||| | || ||  |  | || ||| | || || || || ||  ||||||||      ||||       ||   |||   ||  |     | || ||| ||||   |           |   |   |   |  |||  ||    | || |                      
TCGAGGGAGAAGAGTGATAAGGAGATCATGAGGGAGATTCAAGCTATTATGAGACAGGTTGCTTCAAGTGTTACTTACTTGCCTTGTCTTGATGAAACATgtaag------aaccaattcataggaactttgagtgat-----catcatttcggaactagtttgatttggattctcgtttttgattgtgcatgttgtttgtattag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31406271|gb|CD485003.1|CD485003
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|76019513|gb|DT946683.1|DT946683
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTTGACGTGCTGGCCTACACGGACACGGACGTTGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32800674|gb|CD952910.1|CD952910
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32797390|gb|CD949626.1|CD949626
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32790500|gb|CD942736.1|CD942736
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGGGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32797842|gb|CD950078.1|CD950078
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|31997662|gb|CD661703.1|CD661703
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|211015021|gb|FL312920.1|FL312920
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|87155980|gb|DY400769.1|DY400769
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|31441067|gb|CD510498.1|CD510498
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|31664270|gb|CD572995.1|CD572995
EST:     GTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|34391357|gb|CF384585.1|CF384585
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|78078551|gb|DV506963.1|DV506963
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTTGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|60349178|gb|DN216151.1|DN216151
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|101396571|gb|EB820211.1|EB820211
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTGGACGTGCTGGCCTACACGGACACGGACGTGGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|5713718|gb|AI943710.1|AI943710
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|94475186|gb|EB704144.1|EB704144
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|101396573|gb|EB820212.1|EB820212
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|78023687|gb|DV492074.1|DV492074
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|211437588|gb|FL436643.1|FL436643
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32797599|gb|CD949835.1|CD949835
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|12969132|gb|BG266077.1|BG266077
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGGCGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|4966592|gb|AI691448.1|AI691448
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|148946894|gb|EC892174.2|EC892174
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
EST: gi|32912163|gb|CF016975.1|CF016975
EST:     GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT                         GCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA
genomic: GCGCCAGATCGCGTCTTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagggccg ... aactggtcagGCGTGTTCGACGTGCTGGCCTACACGGACACGGACGTCGACGCTCCGGGCA