1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatccaatttcatgctcagcacattaattttgcttcggtgtttcttgatttggagtcacttagtaattatatgcaccgtatactccctattggata...
species | Zea mays |
transcript | GRMZM2G046587_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|19351061|gb|BM895593.1|BM895593
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: AAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|32849179|gb|CD988860.1|CD988860
genomic: AAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: ACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|88756535|gb|DY540676.1|DY540676
genomic: ACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|13126709|gb|BG317279.1|BG317279
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|32924525|gb|CF029337.1|CF029337
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: ACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|18168735|gb|BM338575.1|BM338575
genomic: ACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|149099848|gb|EE185900.2|EE185900
genomic: GGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTTTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|74244614|gb|DT652528.1|DT652528
genomic: GGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|17931649|gb|BM268609.1|BM268609
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|32924252|gb|CF029064.1|CF029064
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: ACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|60348368|gb|DN215341.1|DN215341
genomic: ACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|32831285|gb|CD970963.1|CD970963
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: AGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTG-TCTNTTATCCCTCTGTTGTTTACCCACATAACTATGGCTTEST: gi|13491080|gb|BG517844.1|BG517844
genomic: AGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCT-TTATTCCTCTGTTGTTTACCCACATAACTATGGCTT
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|74244615|gb|DT652529.1|DT652529
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|9732830|gb|BE511582.1|BE511582
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|32851273|gb|CD990954.1|CD990954
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|60354612|gb|DN221585.1|DN221585
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCEST: gi|149099849|gb|EE185901.2|EE185901
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
EST: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAG GTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
genomic: GAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatcca ... cttgttacagGTGGACCGTGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCATCTGGTCTGATCAAGgtgagatccaatttcatgctcagcacattaattttgcttcggtgtttcttgatttggagtcacttagtaattatatgcaccgtatactccctattggata
- - - - - - - - - - AGCAAG