1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAACCATCTTCTGGGTGGGAGAGTGGTTTATAAAGAAAATGCCATTTGTAAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagcatccattgcatgtgtttctttttttatattttaaagatagtttgcacaagaagttttcttatgtaattattttgttgttag
species | Zea mays |
transcript | GRMZM2G046098_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAAEST: gi|211391866|gb|FL013594.1|FL013594
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAGAATACGACAGCTTTTCAAAGAAAGCTGCA-TAATTCGTCATCCACGEST: gi|50323815|gb|CO518941.1|CO518941
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTT-CAAAGAA-GTTGCAATAATTCGTCATCCACG
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAAEST: gi|88755429|gb|DY539570.1|DY539570
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTEST: gi|91053372|gb|EB163790.1|EB163790
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTT
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAAEST: gi|28910665|gb|CB331552.1|CB331552
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACEST: gi|76293651|gb|DV033219.1|DV033219
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGAC
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAAEST: gi|40287192|gb|CK327584.1|CK327584
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAAEST: gi|74239462|gb|DT647376.1|DT647376
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAAEST: gi|148949550|gb|EC895017.2|EC895017
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
EST: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAG ATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
genomic: AAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagc ... ttgttgttagATCAAAATACGACAGCTTTCAAAGAAGTTGCAATAATTCGTCATCCACGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACCATCTTCTGGGTGGGAGAGTGGTTTATAAAGAAAATGCCATTTGTAAGGCATATATATTCAGCGTCAAAGCAAGTCAGCACTGCAATTTCACCAGgtcaggaagcatccattgcatgtgtttctttttttatattttaaagatagtttgcacaagaagttttcttatgtaattattttgttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG