1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTATTGTTGCAGCCTTCTTGATGAAGTCTAGAGGGTGGAGACTTGCACAATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttcataccctttgaagcttgttgactaattaagacaccgtctctattacattatgaatcattggttccttgcctatcaaatgttaacatttttt...
species | Zea mays |
transcript | GRMZM2G045404_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|5607978|gb|AI901645.1|AI901645
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: CAGGTTCAACTGCCAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|71445833|gb|DR826883.1|DR826883
genomic: CAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTEST: gi|76018560|gb|DT945730.1|DT945730
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCT
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|31354088|gb|CD438445.1|CD438445
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: GTCTTTTCAATGGGTGAAAGACCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|76286478|gb|DV026046.1|DV026046
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|94472551|gb|EB701509.1|EB701509
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTTTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|67020663|gb|CO449412.1|CO449412
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: GTCTTTTCAATGGGTGAAAGACCGAAGACCACAGGTTCAACTGACAGATG CTTCTNCAGAAG-AGCTTTTGGAGTATGAGTTGAAGCTTTTCGGACCCAGTEST: gi|89251347|gb|DY623133.1|DY623133
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCT-CAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGT
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCCACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGEST: gi|67011227|gb|CO439976.1|CO439976
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAG
EST: GTCTTTTCAATGGGTGAAAGACCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGTTGAAGCTTTTCGGACCCAGTAEST: gi|71422091|gb|DR805613.1|DR805613
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|89760803|gb|DY689068.1|DY689068
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|74236962|gb|DT644876.1|DT644876
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|76286477|gb|DV026045.1|DV026045
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|78113628|gb|DV532019.1|DV532019
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|78109343|gb|DV527759.1|DV527759
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: TCTTTTTCA-TGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAEST: gi|76922423|gb|DV168996.1|DV168996
genomic: TCTTTT-CAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|71327044|gb|DR800170.1|DR800170
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTAEST: gi|74244123|gb|DT652037.1|DT652037
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
EST: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATG CTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
genomic: ATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttca ... ttctatgcagCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTTTTCGGACCCAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTGTTGCAGCCTTCTTGATGAAGTCTAGAGGGTGGAGACTTGCACAATCTTTTCAATGGGTGAAAGATCGAAGACCACAGGTTCAACTGACAGATGgttagcttcataccctttgaagcttgttgactaattaagacaccgtctctattacattatgaatcattggttccttgcctatcaaatgttaacatttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG